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Table 2 Annotations of energy metabolism-related DEGs

From: Comparative transcriptome analysis reveals that tricarboxylic acid cycle-related genes are associated with maize CMS-C fertility restoration

Gene ID

Log2 Fold Change

Directiona

Metabolism Process

Description

GRMZM2G345493

−11.00

down

Glycolysis/Pentose phosphate pathway

Fructose-bisphosphate aldolase 7 cytosolic

GRMZM5G836250

−9.81

down

Glycolysis/Pentose phosphate pathway

Fructose-1,6-bisphosphatase cytosolic

GRMZM2G134256

−7.14

down

Pentose phosphate pathway

Transaldolase 2

GRMZM2G046284

−6.94

down

Glycolysis/Pentose phosphate pathway

Fructose-bisphosphate aldolase

GRMZM2G046804

−6.85

down

Glycolysis

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1

GRMZM2G001696

−6.84

down

Glycolysis/Pyruvate metabolism

Phosphoenolpyruvate carboxykinase1

GRMZM2G038791

−6.07

down

Pentose phosphate pathway

Ribose-phosphate pyrophosphokinase

GRMZM2G047592

−5.29

down

Glycolysis

Galactose mutarotase-like superfamily protein

GRMZM2G080375

−4.97

down

Glycolysis/Pentose phosphate pathway

ATP-dependent 6-phosphofructokinase 4 chloroplastic

GRMZM2G442658

−4.02

down

Glycolysis

Alcohol dehydrogenase 1

GRMZM2G155253

−3.39

down

Glycolysis/Pyruvate metabolism

Fructose-bisphosphate aldolase

GRMZM2G031107

−3.23

down

Pentose phosphate pathway

Glucose-6-phosphate 1-dehydrogenase

GRMZM2G083841

−3.18

down

Pyruvate metabolism

Phosphoenolpyruvate carboxylase 1

GRMZM5G852968

−2.91

down

Glycolysis

Triosephosphate isomerase

GRMZM2G306732

−2.78

down

Glycolysis/Pentose phosphate pathway

Fructose-1,6-bisphosphatase

GRMZM2G129513

−2.69

down

Pyruvate metabolism

Malate dehydrogenase 6

GRMZM2G026807

−2.39

down

Pentose phosphate pathway

Ribulose-phosphate 3-epimerase

GRMZM2G144730

−2.28

down

Glycolysis/Pyruvate metabolism

Pyruvate kinase

GRMZM2G127546

−2.09

down

Glycolysis/Pyruvate metabolism

Pyruvate dehydrogenase E1 component subunit beta-3 chloroplastic

GRMZM5G870932

−2.01

down

Glycolysis/Pyruvate metabolism

Phosphoenolpyruvate carboxykinase homologue 2

GRMZM2G415359

−1.96

down

Pyruvate metabolism

Malate dehydrogenase 5

GRMZM2G179521

−1.94

down

Pentose phosphate pathway

Glucose-6-phosphate 1-dehydrogenase

GRMZM5G879882

−1.92

down

Glycolysis/Pentose phosphate pathway

6-phosphofructokinase

GRMZM2G041356

−1.80

down

Glycolysis

Aldose 1-epimerase

GRMZM2G152975

−1.75

down

Glycolysis

Putative alcohol dehydrogenase superfamily protein

GRMZM2G033208

−1.55

down

Pentose phosphate pathway

Transketolase 1

GRMZM5G824600

No expression in NIL_Rf4

down

Glycolysis

Formaldehyde dehydrogenase homologue 1

GRMZM2G152981

0.40

up

Glycolysis

Putative alcohol dehydrogenase superfamily protein

GRMZM2G104632

1.50

up

Glycolysis

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic

GRMZM2G057823

1.53

up

Glycolysis/Pentose phosphate pathway

Aldolase 1

GRMZM2G335657

1.56

up

Glycolysis/Pyruvate metabolism

Dihydrolipoyl dehydrogenase

GRMZM2G104081

1.64

up

Glycolysis

Hexokinase 1

GRMZM2G069542

1.85

up

Pyruvate metabolism

Phosphoenolpyruvate carboxylase 7

GRMZM2G466833

1.92

up

Pyruvate metabolism

Malate dehydrogenase3

GRMZM2G180625

1.93

up

Glycolysis

Cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC2

GRMZM2G023289

2.02

up

Glycolysis/Pentose phosphate pathway

Phosphoglucomutase 2

GRMZM2G043198

2.07

up

Glycolysis/Pentose phosphate pathway

Pyruvate dehydrogenase 2

GRMZM2G097226

2.15

up

Glycolysis/Pyruvate metabolism

Pyruvate dehydrogenase E1 beta subunit

GRMZM2G125233

2.28

up

Glycolysis

Galactose mutarotase-like superfamily protein

GRMZM2G440208

2.43

up

Pentose phosphate pathway

6-phosphogluconate dehydrogenase, decarboxylating

GRMZM2G098346

2.50

up

Glycolysis

Alcohol dehydrogenase 2

GRMZM2G066024

2.52

up

Glycolysis/Pentose phosphate pathway

Fructose-bisphosphate aldolase cytoplasmic isozyme

GRMZM2G139360

2.54

up

Glycolysis/Pentose phosphate pathway

ATP-dependent 6-phosphofructokinase 5 chloroplastic

GRMZM2G136918

2.73

up

Pentose phosphate pathway

Putative 6-phosphogluconolactonase 1

GRMZM2G058702

2.74

up

Glycolysis/Pyruvate metabolism

Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex chloroplastic

GRMZM2G162663

2.84

up

Glycolysis/Pyruvate metabolism

Acetyl-coenzyme A synthetase chloroplastic/glyoxysomal

GRMZM2G161245

2.96

up

Pyruvate metabolism

Malate dehydrogenase

GRMZM5G860137

3.01

up

Pyruvate metabolism

Acetyl-CoA acetyltransferase, cytosolic 2

GRMZM2G177947

3.12

up

Glycolysis/Pyruvate metabolism

Pyruvate kinase

GRMZM2G110714

3.18

up

Pyruvate metabolism

Phosphoenolpyruvate carboxylase 3

GRMZM2G074122

3.25

up

Pyruvate metabolism

Phosphoenolpyruvate carboxylase isoform 1

GRMZM2G322953

3.42

up

Glycolysis

Fructose-1,6-bisphosphatase, cytosolic

GRMZM2G003385

3.53

up

Glycolysis/Pentose phosphate pathway

2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1

GRMZM5G886257

4.17

up

Pyruvate metabolism

NADP-dependent malic enzyme

GRMZM2G146206

4.19

up

Glycolysis

Triosephosphate isomerase, cytosolic

GRMZM2G003354

4.62

up

Glycolysis

Apospory-associated protein C

GRMZM2G154007

12.00

up

Glycolysis

Alcohol dehydrogenase-like 2

GRMZM2G071630

No expression in NIL_rf4

up

Glycolysis

Cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3

  1. aDirection means relative to the expression level in NIL_Rf4