Table 1 RNA-Seq data-sets included in AgriSeqDB

Seed germination

Arabidopsis

(Arabidopsis thaliana)

Whole seed

0 to 48 h post stratification

GSE94459

[20]

Seed germination

Barley

(Hordeum vulgare L.)

aleurone, starchy endosperm, embryo, scutellum, pericarptesta, husk and crushed cell layers

0 to 24 h

PRJNA378132

[21]

Endosperm development

Maize

(Zea mays L.)

Different cell types of endosperm (embryo, nucellus, placento-chalazal region, pericarp, and the vascular region of the pedicel)

8 d after pollination

GSE62778

[22]

Seed germination and coleoptile growth

Rice

(Oryza sativa L.)

Embryo and coleoptile

0 h to 4 d

GSE115373)

[23]

Grain/endosperm development

Bread wheat

(Triticum aestivum L.)

starchy

endosperm, aleurone layer, transfer cells

10, 20, or 30 days post anthesis (DPA)

E-MTAB-2137

[24]

Fruit development

Tomato

(Solanum lycopersicum L.)

Fruit

Mature ripe fruits

GSE75273

[26]