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Table 5 Over- and under-accumulated chloroplast-encoded proteins in the clpc1 mutant and its complementation lines

From: The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

 

1st batch

4-week-old (LD)

2nd batch (2 biological replicates)

2-week-old (LD)

Nishimura et al (2013)

6-week-old (SD)

SYMBOL

ID

clpc1/WS

ΔN/WS

CP/WS

clpci/ws

ΔN/WS

CP/WS

clpc1–1/wt

a. over-accumulated

 RPS4

ATCG00380.1

6.5 ± 0.4

4.9 ± 0.3

0.7 ± 0.1

1.8 ± 0.2

1.9 ± 0.0

0.8 ± 0.1

18.6

 CLPP1

ATCG00670.1

4.7 ± 0.3

3.2 ± 0.1

1.0 ± 0.2

1.5 ± 0.0

1.2 ± 0.2

0.9 ± 0.2

1.2

 RPS15

ATCG01120.1

3.4 ± 0.3*

2.8 ± 0.2

0.8 ± 0.1

1.7 ± 0.5

1.4 ± 0.1

1.1 ± 0.4

1.0

 RPL22

ATCG00810.1

3.4 ± 0.3*

2.9 ± 0.3

0.9 ± 0.1

2.1 ± 0.1*

1.9 ± 0.1

1.0 ± 0.0

n.a

 RPS8

ATCG00770.1

3.3 ± 0.4

2.5 ± 0.4

0.8 ± 0.1

1.8 ± 0.5

1.5 ± 0.2

1.0 ± 0.1

10.7

 RPOB

ATCG00190.1

3.3 ± 0.6*

3.9 ± 0.9

1.3 ± 0.1

1.5 ± 0.0*

1.7 ± 0.0

1.6 ± 0.2

n.a

 RPS18

ATCG00650.1

3.2 ± 0.4*

2.6 ± 0.1

0.8 ± 0.1

1.6 ± 0.1*

1.7 ± 0.1

1.0 ± 0.2

n.a

 RPS2

ATCG00160.1

3.2 ± 0.1

2.8 ± 0.1

0.9 ± 0.1

1.6 ± 0.6

1.5 ± 0.4

0.9 ± 0.2

4.5

 RPS7

ATCG00900.1

3.1 ± 0.2

2.6 ± 0.2

0.8 ± 0.1

1.6 ± 0.2

1.5 ± 0.1

1.0 ± 0.3

175.6

 RPS3

ATCG00800.1

3.0 ± 0.2*

2.5 ± 0.2

1.0 ± 0.1

1.8 ± 0.0*

1.7 ± 0.0

0.8 ± 0.1

0.9

 RPOA

ATCG00740.1

3.0 ± 0.4*

3.0 ± 0.2

0.9 ± 0.1

2.0 ± 0.1*

1.9 ± 0.1

1.5 ± 0.1

n.a

 RPS14

ATCG00330.1

2.9 ± 0.6

2.3 ± 0.4

0.9 ± 0.1

1.0 ± 0.7

1.4 ± 0.2

1.2 ± 0.4

n.a

 RPL20

ATCG00660.1

2.7 ± 0.5*

2.8 ± 0.6

0.8 ± 0.1

1.9 ± 1.1*

1.5 ± 0.1

3.6 ± 2.3

n.a

 RPL14

ATCG00780.1

2.6 ± 0.2

2.7 ± 0.3

0.9 ± 0.1

1.9 ± 0.2

1.7 ± 0.2

0.5 ± 0.0

1.6

 RPS19

ATCG00820.1

2.6 ± 0.5*

2.3 ± 0.4

0.8 ± 0.1

2.5 ± 0.8*

1.5 ± 0.1

1.2 ± 0.1

n.a

 ACCD

ATCG00500.1

2.5 ± 0.2*

2.2 ± 0.2

1.0 ± 0.1

1.5 ± 0.1

1.3 ± 0.1

0.8 ± 0.0

n.a

 RPL16

ATCG00790.1

2.2 ± 0.2*

2.1 ± 0.1

1.0 ± 0.1

1.3 ± 0.2

1.2 ± 0.0

1.7 ± 0.1

n.a

 RPOC2

ATCG00170.1

n.a

n.a

n.a

1.5 ± 0.1

1.6 ± 0.0

1.5 ± 0.3

n.a

b. under-accumulated

 PSAB

ATCG00340.1

0.4 ± 0.1*

0.5 ± 0.1

1.1 ± 0.1

0.6 ± 0.1*

0.7 ± 0.1

2.6 ± 0.6

n.a

 PSBC

ATCG00280.1

0.4 ± 0.1*

0.5 ± 0.1

1.0 ± 0.1

0.6 ± 0.1*

0.7 ± 0.0

2.9 ± 0.1

n.a

 PSAA

ATCG00350.1

0.4 ± 0.1*

0.5 ± 0.1

1.2 ± 0.1

0.6 ± 0.2

0.8 ± 0.3

2.6 ± 1.0

n.a

 PETB

ATCG00720.1

0.4 ± 0.1

0.5 ± 0.1

1.2 ± 0.1

0.4 ± 0.0

0.5 ± 0.0

1.2 ± 0.1

1.0

 PSBA

ATCG00020.1

0.3 ± 0.1*

0.6 ± 0.1

1.0 ± 0.1

0.7 ± 0.1

0.7 ± 0.1

2.3 ± 0.2

n.a

 PSBD

ATCG00270.1

0.3 ± 0.1*

0.5 ± 0.1

1.0 ± 0.1

0.8 ± 0.1

0.8 ± 0.0

2.8 ± 0.1

n.a

 PSBB

ATCG00680.1

0.3 ± 0.1*

0.5 ± 0.1

1.1 ± 0.1

0.6 ± 0.1*

0.7 ± 0.1

2.2 ± 0.5

n.a

 PSBH

ATCG00710.1

0.3 ± 0.1*

0.5 ± 0.1

0.8 ± 0.1

0.3 ± 0.0*

0.5 ± 0.0

0.8 ± 0.0

n.a

 PSBE

ATCG00580.1

0.3 ± 0.1*

0.5 ± 0.1

0.9 ± 0.1

0.8 ± 0.2

0.7 ± 0.2

2.2 ± 0.3

n.a

 PSAC

ATCG01060.1

0.2 ± 0.1*

0.3 ± 0.1

1.0 ± 0.1

0.2 ± 0.0*

0.3 ± 0.0

1.0 ± 0.0

n.a

  1. Notes: See notes of Table 1
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BMC Plant Biology

ISSN: 1471-2229

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