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Table 5 Over- and under-accumulated chloroplast-encoded proteins in the clpc1 mutant and its complementation lines

From: The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

  1st batch
4-week-old (LD)
2nd batch (2 biological replicates)
2-week-old (LD)
Nishimura et al (2013)
6-week-old (SD)
SYMBOL ID clpc1/WS ΔN/WS CP/WS clpci/ws ΔN/WS CP/WS clpc1–1/wt
a. over-accumulated
 RPS4 ATCG00380.1 6.5 ± 0.4 4.9 ± 0.3 0.7 ± 0.1 1.8 ± 0.2 1.9 ± 0.0 0.8 ± 0.1 18.6
 CLPP1 ATCG00670.1 4.7 ± 0.3 3.2 ± 0.1 1.0 ± 0.2 1.5 ± 0.0 1.2 ± 0.2 0.9 ± 0.2 1.2
 RPS15 ATCG01120.1 3.4 ± 0.3* 2.8 ± 0.2 0.8 ± 0.1 1.7 ± 0.5 1.4 ± 0.1 1.1 ± 0.4 1.0
 RPL22 ATCG00810.1 3.4 ± 0.3* 2.9 ± 0.3 0.9 ± 0.1 2.1 ± 0.1* 1.9 ± 0.1 1.0 ± 0.0 n.a
 RPS8 ATCG00770.1 3.3 ± 0.4 2.5 ± 0.4 0.8 ± 0.1 1.8 ± 0.5 1.5 ± 0.2 1.0 ± 0.1 10.7
 RPOB ATCG00190.1 3.3 ± 0.6* 3.9 ± 0.9 1.3 ± 0.1 1.5 ± 0.0* 1.7 ± 0.0 1.6 ± 0.2 n.a
 RPS18 ATCG00650.1 3.2 ± 0.4* 2.6 ± 0.1 0.8 ± 0.1 1.6 ± 0.1* 1.7 ± 0.1 1.0 ± 0.2 n.a
 RPS2 ATCG00160.1 3.2 ± 0.1 2.8 ± 0.1 0.9 ± 0.1 1.6 ± 0.6 1.5 ± 0.4 0.9 ± 0.2 4.5
 RPS7 ATCG00900.1 3.1 ± 0.2 2.6 ± 0.2 0.8 ± 0.1 1.6 ± 0.2 1.5 ± 0.1 1.0 ± 0.3 175.6
 RPS3 ATCG00800.1 3.0 ± 0.2* 2.5 ± 0.2 1.0 ± 0.1 1.8 ± 0.0* 1.7 ± 0.0 0.8 ± 0.1 0.9
 RPOA ATCG00740.1 3.0 ± 0.4* 3.0 ± 0.2 0.9 ± 0.1 2.0 ± 0.1* 1.9 ± 0.1 1.5 ± 0.1 n.a
 RPS14 ATCG00330.1 2.9 ± 0.6 2.3 ± 0.4 0.9 ± 0.1 1.0 ± 0.7 1.4 ± 0.2 1.2 ± 0.4 n.a
 RPL20 ATCG00660.1 2.7 ± 0.5* 2.8 ± 0.6 0.8 ± 0.1 1.9 ± 1.1* 1.5 ± 0.1 3.6 ± 2.3 n.a
 RPL14 ATCG00780.1 2.6 ± 0.2 2.7 ± 0.3 0.9 ± 0.1 1.9 ± 0.2 1.7 ± 0.2 0.5 ± 0.0 1.6
 RPS19 ATCG00820.1 2.6 ± 0.5* 2.3 ± 0.4 0.8 ± 0.1 2.5 ± 0.8* 1.5 ± 0.1 1.2 ± 0.1 n.a
 ACCD ATCG00500.1 2.5 ± 0.2* 2.2 ± 0.2 1.0 ± 0.1 1.5 ± 0.1 1.3 ± 0.1 0.8 ± 0.0 n.a
 RPL16 ATCG00790.1 2.2 ± 0.2* 2.1 ± 0.1 1.0 ± 0.1 1.3 ± 0.2 1.2 ± 0.0 1.7 ± 0.1 n.a
 RPOC2 ATCG00170.1 n.a n.a n.a 1.5 ± 0.1 1.6 ± 0.0 1.5 ± 0.3 n.a
b. under-accumulated
 PSAB ATCG00340.1 0.4 ± 0.1* 0.5 ± 0.1 1.1 ± 0.1 0.6 ± 0.1* 0.7 ± 0.1 2.6 ± 0.6 n.a
 PSBC ATCG00280.1 0.4 ± 0.1* 0.5 ± 0.1 1.0 ± 0.1 0.6 ± 0.1* 0.7 ± 0.0 2.9 ± 0.1 n.a
 PSAA ATCG00350.1 0.4 ± 0.1* 0.5 ± 0.1 1.2 ± 0.1 0.6 ± 0.2 0.8 ± 0.3 2.6 ± 1.0 n.a
 PETB ATCG00720.1 0.4 ± 0.1 0.5 ± 0.1 1.2 ± 0.1 0.4 ± 0.0 0.5 ± 0.0 1.2 ± 0.1 1.0
 PSBA ATCG00020.1 0.3 ± 0.1* 0.6 ± 0.1 1.0 ± 0.1 0.7 ± 0.1 0.7 ± 0.1 2.3 ± 0.2 n.a
 PSBD ATCG00270.1 0.3 ± 0.1* 0.5 ± 0.1 1.0 ± 0.1 0.8 ± 0.1 0.8 ± 0.0 2.8 ± 0.1 n.a
 PSBB ATCG00680.1 0.3 ± 0.1* 0.5 ± 0.1 1.1 ± 0.1 0.6 ± 0.1* 0.7 ± 0.1 2.2 ± 0.5 n.a
 PSBH ATCG00710.1 0.3 ± 0.1* 0.5 ± 0.1 0.8 ± 0.1 0.3 ± 0.0* 0.5 ± 0.0 0.8 ± 0.0 n.a
 PSBE ATCG00580.1 0.3 ± 0.1* 0.5 ± 0.1 0.9 ± 0.1 0.8 ± 0.2 0.7 ± 0.2 2.2 ± 0.3 n.a
 PSAC ATCG01060.1 0.2 ± 0.1* 0.3 ± 0.1 1.0 ± 0.1 0.2 ± 0.0* 0.3 ± 0.0 1.0 ± 0.0 n.a
  1. Notes: See notes of Table 1