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Table 4 Relative abundance of protein components in the CLPP and translocon complexes

From: The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

  1st batch
4-week-old (LD)
2nd batch (2 biological replicates)
2-week-old (LD)
Nishimura et al (2013)
6-week-old (SD)
symbol accession clpcl/WS ΔN/WS CP/WS clpcl/WS ΔN/WS CP/WS clpc1–1/wt
a. CLPP components
 CLPP1 ATCG00670.1 4.7 ± 0.3 3.2 ± 0.1 1.0 ± 0.2 1.5 ± 0.0 1.2 ± 0.2 1.0 ± 0.0 1.2
 ClpR3 AT1G09130.1 4.6 ± 1.1 2.5 ± 0.6 0.7 ± 0.1 1.8 ± 0.0 1.4 ± 0.1 0.7 ± 0.2 1.4
 ClpT1 AT4G25370.1 4.4 ± 0.3 2.8 ± 0.2 0.9 ± 0.1 1.9 ± 0.7 1.2 ± 0.4 1.0 ± 0.0 2.1
 CLPR1 AT1G49970.1 4.1 ± 1.5 2.3 ± 0.5 0.9 ± 0.1 2.3 ± 0.9 1.5 ± 0.4 0.7 ± 0.0 1.9
 CLPC2 AT3G48870.2 4.0 ± 1.1 3.1 ± 0.5 1.4 ± 0.1 1.5 ± 0.1 1.7 ± 0.0 0.8 ± 0.0 2.5
 CLPR2 AT1G12410.1 3.8 ± 0.3 2.7 ± 0.1 0.8 ± 0.1 2.4 ± 0.7 1.5 ± 0.4 0.8 ± 0.1 2.1
 CLPP4 AT5G45390.1 3.8 ± 0.2 2.6 ± 0.2 0.7 ± 0.1 2.0 ± 0.3 1.6 ± 0.3 0.7 ± 0.1 1.3
 CLPP6 AT1G11750.1 3.4 ± 0.3 2.9 ± 0.3 0.9 ± 0.1 1.7 ± 0.5 1.7 ± 0.3 0.7 ± 0.1 3.6
 CLPP3 AT1G66670.1 3.3 ± 0.3* 2.6 ± 0.2 0.9 ± 0.2 1.5 ± 0.2* 1.3 ± 0.1 0.7 ± 0.3 1.0
 CLPR4 AT4G17040.1 3.1 ± 1.0 2.0 ± 0.4 0.9 ± 0.1 2.0 ± 0.2 1.6 ± 0.1 0.7 ± 0.2 1.5
 ClpT2 AT4G12060.1 3.0 ± 0.2 2.1 ± 0.1 0.9 ± 0.1 1.9 ± 0.2 1.5 ± 0.1 1.1 ± 0.1 1.4
 CLPB3 AT5G15450.1 2.3 ± 0.9 1.6 ± 0.2 1.1 ± 0.1 2.3 ± 0.3 1.5 ± 0.1 0.7 ± 0.0 3.4
b. TIC/TOC complex components
 TIC40 AT5G16620.1 3.1 ± 0.3* 2.4 ± 0.3 0.9 ± 0.1 1.6 ± 0.0* 1.9 ± 0.0 0.9 ± 0.0 n.a
 ATTIC 110 AT1G06950.1 2.6 ± 0.1* 2.0 ± 0.1 0.9 ± 0.1 1.3 ± 0.0* 1.4 ± 0.0 0.7 ± 0.1 0.0
 TOC64-III AT3G17970.1 2.2 ± 0.0* 2.0 ± 0.0 1.1 ± 0.0 1.3 ± 0.1 1.2 ± 0.1 0.9 ± 0.0 n.a
 TOC33 AT1G02280.1 2.2 ± 0.1* 2.2 ± 0.1 0.8 ± 0.1 1.1 ± 0.1 1.5 ± 0.0 0.9 ± 0.1 n.a
 TOC 159 AT4G02510.1 1.8 ± 0.3 1.9 ± 0.2 1.0 ± 0.2 1.1 ± 0.0 1.5 ± 0.0 0.9 ± 0.0 1.1
 TIC55-IV AT4G25650.1 1.5 ± 0.1* 1.7 ± 0.1 1.5 ± 0.1 1.6 ± 0.1* 1.6 ± 0.0 1.3 ± 0.1 n.a
 TIC55-II AT2G24820.1 1.5 ± 0.1* 1.7 ± 0.1 1.5 ± 0.1 1.6 ± 0.1* 1.6 ± 0.0 1.3 ± 0.1 n.a
 TOC75-III AT3G46740.1 1.3 ± 0.1 1.6 ± 0.1 1.2 ± 0.1 1.2 ± 0.1 1.4 ± 0.1 0.8 ± 0.0 n.a
  1. Notes: See notes of Table 1