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Table 4 Relative abundance of protein components in the CLPP and translocon complexes

From: The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

 

1st batch

4-week-old (LD)

2nd batch (2 biological replicates)

2-week-old (LD)

Nishimura et al (2013)

6-week-old (SD)

symbol

accession

clpcl/WS

ΔN/WS

CP/WS

clpcl/WS

ΔN/WS

CP/WS

clpc1–1/wt

a. CLPP components

 CLPP1

ATCG00670.1

4.7 ± 0.3

3.2 ± 0.1

1.0 ± 0.2

1.5 ± 0.0

1.2 ± 0.2

1.0 ± 0.0

1.2

 ClpR3

AT1G09130.1

4.6 ± 1.1

2.5 ± 0.6

0.7 ± 0.1

1.8 ± 0.0

1.4 ± 0.1

0.7 ± 0.2

1.4

 ClpT1

AT4G25370.1

4.4 ± 0.3

2.8 ± 0.2

0.9 ± 0.1

1.9 ± 0.7

1.2 ± 0.4

1.0 ± 0.0

2.1

 CLPR1

AT1G49970.1

4.1 ± 1.5

2.3 ± 0.5

0.9 ± 0.1

2.3 ± 0.9

1.5 ± 0.4

0.7 ± 0.0

1.9

 CLPC2

AT3G48870.2

4.0 ± 1.1

3.1 ± 0.5

1.4 ± 0.1

1.5 ± 0.1

1.7 ± 0.0

0.8 ± 0.0

2.5

 CLPR2

AT1G12410.1

3.8 ± 0.3

2.7 ± 0.1

0.8 ± 0.1

2.4 ± 0.7

1.5 ± 0.4

0.8 ± 0.1

2.1

 CLPP4

AT5G45390.1

3.8 ± 0.2

2.6 ± 0.2

0.7 ± 0.1

2.0 ± 0.3

1.6 ± 0.3

0.7 ± 0.1

1.3

 CLPP6

AT1G11750.1

3.4 ± 0.3

2.9 ± 0.3

0.9 ± 0.1

1.7 ± 0.5

1.7 ± 0.3

0.7 ± 0.1

3.6

 CLPP3

AT1G66670.1

3.3 ± 0.3*

2.6 ± 0.2

0.9 ± 0.2

1.5 ± 0.2*

1.3 ± 0.1

0.7 ± 0.3

1.0

 CLPR4

AT4G17040.1

3.1 ± 1.0

2.0 ± 0.4

0.9 ± 0.1

2.0 ± 0.2

1.6 ± 0.1

0.7 ± 0.2

1.5

 ClpT2

AT4G12060.1

3.0 ± 0.2

2.1 ± 0.1

0.9 ± 0.1

1.9 ± 0.2

1.5 ± 0.1

1.1 ± 0.1

1.4

 CLPB3

AT5G15450.1

2.3 ± 0.9

1.6 ± 0.2

1.1 ± 0.1

2.3 ± 0.3

1.5 ± 0.1

0.7 ± 0.0

3.4

b. TIC/TOC complex components

 TIC40

AT5G16620.1

3.1 ± 0.3*

2.4 ± 0.3

0.9 ± 0.1

1.6 ± 0.0*

1.9 ± 0.0

0.9 ± 0.0

n.a

 ATTIC 110

AT1G06950.1

2.6 ± 0.1*

2.0 ± 0.1

0.9 ± 0.1

1.3 ± 0.0*

1.4 ± 0.0

0.7 ± 0.1

0.0

 TOC64-III

AT3G17970.1

2.2 ± 0.0*

2.0 ± 0.0

1.1 ± 0.0

1.3 ± 0.1

1.2 ± 0.1

0.9 ± 0.0

n.a

 TOC33

AT1G02280.1

2.2 ± 0.1*

2.2 ± 0.1

0.8 ± 0.1

1.1 ± 0.1

1.5 ± 0.0

0.9 ± 0.1

n.a

 TOC 159

AT4G02510.1

1.8 ± 0.3

1.9 ± 0.2

1.0 ± 0.2

1.1 ± 0.0

1.5 ± 0.0

0.9 ± 0.0

1.1

 TIC55-IV

AT4G25650.1

1.5 ± 0.1*

1.7 ± 0.1

1.5 ± 0.1

1.6 ± 0.1*

1.6 ± 0.0

1.3 ± 0.1

n.a

 TIC55-II

AT2G24820.1

1.5 ± 0.1*

1.7 ± 0.1

1.5 ± 0.1

1.6 ± 0.1*

1.6 ± 0.0

1.3 ± 0.1

n.a

 TOC75-III

AT3G46740.1

1.3 ± 0.1

1.6 ± 0.1

1.2 ± 0.1

1.2 ± 0.1

1.4 ± 0.1

0.8 ± 0.0

n.a

  1. Notes: See notes of Table 1