| 1st batch 4-week-old (LD) | 2nd batch (2 biological replicates) 2-week-old (LD) | Nishimura et al (2013) 6-week-old (SD) | |||||
---|---|---|---|---|---|---|---|---|
clpc1/WS | ΔN/WS | CP/WS | clpc1/WS | ΔN/WS | CP/WS | clpc1–1/wt | ||
PPR proteins | ||||||||
 MEE40 | AT3G53700.1 | 3.1 ± 1.4* | 2.6 ± 1.0 | 1.1 ± 0.1 | 2.4 ± 0.3* | 2.2 ± 0.0 | 1.1 ± 0.0 | n.a |
 SVR7 | AT4G16390.1 | 3.0 ± 0.3* | 2.5 ± 0.3 | 1.1 ± 0.2 | 1.7 ± 0.0* | 1.7 ± 0.0 | 0.7 ± 0.0 | 1.0 |
 MRL1 | AT4G34830.1 | 3.9 ± 0.4* | 3.1 ± 0.7 | 1.0 ± 0.1 | 1.4 ± 0.5 | 1.6 ± 0.6 | 1.1 ± 0.1 | n.a |
PEP proteins | ||||||||
 RPOA | ATCG00740.1 | 3.0 ± 0.4* | 3.0 ± 0.2 | 0.9 ± 0.1 | 2.0 ± 0.1* | 1.9 ± 0.1 | 1.5 ± 0.1 | n.a |
 RPOB | ATCG00190.1 | 3.3 ± 0.6* | 3.9 ± 0.9 | 1.3 ± 0.1 | 1.5 ± 0.0* | 1.7 ± 0.0 | 1.6 ± 0.2 | n.a |
 RPOC2 | ATCG00170.1 | n.a | n.a | n.a | 1.5 ± 0.1* | 1.6 ± 0.0 | 1.5 ± 0.3 | n.a |
RNA binding proteins | ||||||||
 RH3 | AT5G26742.1 | 8.3 ± 0.8* | 3.0 ± 0.3 | 0.7 ± 0.1 | 2.6 ± 0.1* | 2.0 ± 0.1 | 0.8 ± 0.1 | 1.0 |
 RNA-binding | AT1G70200.1 | 4.9 ± 1.7* | 3.4 ± 0.8 | 0.9 ± 0.1 | 3.0 ± 0.2* | 2.9 ± 0.1 | 1.1 ± 0.0 | n.a |
 RNA-binding | AT4G09040.2 | 4.8 ± 0.6 | 3.8 ± 0.5 | 1.1 ± 0.1 | 1.8 ± 0.2 | 1.6 ± 0.1 | 0.6 ± 0.0 | 596.1 |
 RNA-binding | AT3G52150.1 | 4.4 ± 0.6* | 2.7 ± 0.5 | 0.8 ± 0.1 | 2.3 ± 0.5* | 2.1 ± 0.4 | 0.5 ± 0.1 | n.a |
 CP29 | AT3G53460.1 | 4.1 ± 0.5 | 2.3 ± 0.2 | 1.0 ± 0.1 | 2.0 ± 0.4 | 1.7 ± 0.2 | 0.5 ± 0.0 | 5.4 |
 RNA-binding | AT1G73530.1 | 4.1 ± 0.1* | 3.3 ± 0.1 | 0.9 ± 0.1 | 1.6 ± 0.3* | 1.3 ± 0.2 | 1.2 ± 0.0 | n.a |
 RNA-binding | AT2G35410.1 | 3.1 ± 0.3 | 2.7 ± 0.2 | 0.9 ± 0.1 | 1.4 ± 0.2 | 1.4 ± 0.1 | 0.6 ± 0.1 | 1.6 |
 CP33 | AT3G52380.1 | 2.6 ± 0.1 | 1.9 ± 0.1 | 0.8 ± 0.1 | 1.2 ± 0.0 | 1.2 ± 0.0 | 0.6 ± 0.1 | 0.9 |
 RBP31 | AT4G24770.1 | 2.4 ± 0.1 | 1.6 ± 0.1 | 0.8 ± 0.1 | 1.0 ± 0.0 | 1.2 ± 0.0 | 0.8 ± 0.1 | 0.8 |
RNA modification protein | ||||||||
 16S rRNA process | AT5G46420.1 | 4.7 ± 1.6* | 3.8 ± 13 | 0.9 ± 0.6 | 2.3 ± 0.1* | 2.0 ± 0.1 | 0.8 ± 0.0 | n.a |
 RIF10, PNPase | AT3G03710.1 | 4.1 ± 0.5 | 3.1 ± 0.5 | 0.9 ± 0.1 | 1.5 ± 0.1 | 1.6 ± 0.0 | 0.8 ± 0.0 | 1.6 |
 RNA 3′ phosphate | AT1G48860.1 | 2.6 ± 0.0* | 1.5 ± 0.0 | 1.1 ± 0.0 | 1.5 ± 0.2* | 1.0 ± 0.2 | 0.5 ± 0.1 | 0.9 |
RNAses | ||||||||
 RNAse J | AT5G63420.1 | 3.0 ± 0.2* | 2.8 ± 0.1 | 1.1 ± 0.2 | 1.4 ± 0.0* | 1.7 ± 0.1 | 0.9 ± 0.2 | n.a |
 CSP41B | AT1G09340.1 | 2.3 ± 0.1 | 1.3 ± 0.1 | 0.7 ± 0.1 | 1.0 ± 0.1 | 0.8 ± 0.1 | 0.5 ± 0.1 | 0.4 |
 PRORP1 | AT2G32230.1 | 1.9 ± 0.0* | 1.8 ± 0.0 | 0.9 ± 0.0 | 1.7 ± 0.0* | 1.8 ± 0.1 | 1.0 ± 0.3 | n.a |