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Table 2 Chloroplast RNA metabolism proteins in the clpc1 mutant and the complementary lines

From: The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

  1st batch
4-week-old (LD)
2nd batch (2 biological replicates)
2-week-old (LD)
Nishimura et al (2013)
6-week-old (SD)
clpc1/WS ΔN/WS CP/WS clpc1/WS ΔN/WS CP/WS clpc1–1/wt
PPR proteins
 MEE40 AT3G53700.1 3.1 ± 1.4* 2.6 ± 1.0 1.1 ± 0.1 2.4 ± 0.3* 2.2 ± 0.0 1.1 ± 0.0 n.a
 SVR7 AT4G16390.1 3.0 ± 0.3* 2.5 ± 0.3 1.1 ± 0.2 1.7 ± 0.0* 1.7 ± 0.0 0.7 ± 0.0 1.0
 MRL1 AT4G34830.1 3.9 ± 0.4* 3.1 ± 0.7 1.0 ± 0.1 1.4 ± 0.5 1.6 ± 0.6 1.1 ± 0.1 n.a
PEP proteins
 RPOA ATCG00740.1 3.0 ± 0.4* 3.0 ± 0.2 0.9 ± 0.1 2.0 ± 0.1* 1.9 ± 0.1 1.5 ± 0.1 n.a
 RPOB ATCG00190.1 3.3 ± 0.6* 3.9 ± 0.9 1.3 ± 0.1 1.5 ± 0.0* 1.7 ± 0.0 1.6 ± 0.2 n.a
 RPOC2 ATCG00170.1 n.a n.a n.a 1.5 ± 0.1* 1.6 ± 0.0 1.5 ± 0.3 n.a
RNA binding proteins
 RH3 AT5G26742.1 8.3 ± 0.8* 3.0 ± 0.3 0.7 ± 0.1 2.6 ± 0.1* 2.0 ± 0.1 0.8 ± 0.1 1.0
 RNA-binding AT1G70200.1 4.9 ± 1.7* 3.4 ± 0.8 0.9 ± 0.1 3.0 ± 0.2* 2.9 ± 0.1 1.1 ± 0.0 n.a
 RNA-binding AT4G09040.2 4.8 ± 0.6 3.8 ± 0.5 1.1 ± 0.1 1.8 ± 0.2 1.6 ± 0.1 0.6 ± 0.0 596.1
 RNA-binding AT3G52150.1 4.4 ± 0.6* 2.7 ± 0.5 0.8 ± 0.1 2.3 ± 0.5* 2.1 ± 0.4 0.5 ± 0.1 n.a
 CP29 AT3G53460.1 4.1 ± 0.5 2.3 ± 0.2 1.0 ± 0.1 2.0 ± 0.4 1.7 ± 0.2 0.5 ± 0.0 5.4
 RNA-binding AT1G73530.1 4.1 ± 0.1* 3.3 ± 0.1 0.9 ± 0.1 1.6 ± 0.3* 1.3 ± 0.2 1.2 ± 0.0 n.a
 RNA-binding AT2G35410.1 3.1 ± 0.3 2.7 ± 0.2 0.9 ± 0.1 1.4 ± 0.2 1.4 ± 0.1 0.6 ± 0.1 1.6
 CP33 AT3G52380.1 2.6 ± 0.1 1.9 ± 0.1 0.8 ± 0.1 1.2 ± 0.0 1.2 ± 0.0 0.6 ± 0.1 0.9
 RBP31 AT4G24770.1 2.4 ± 0.1 1.6 ± 0.1 0.8 ± 0.1 1.0 ± 0.0 1.2 ± 0.0 0.8 ± 0.1 0.8
RNA modification protein
 16S rRNA process AT5G46420.1 4.7 ± 1.6* 3.8 ± 13 0.9 ± 0.6 2.3 ± 0.1* 2.0 ± 0.1 0.8 ± 0.0 n.a
 RIF10, PNPase AT3G03710.1 4.1 ± 0.5 3.1 ± 0.5 0.9 ± 0.1 1.5 ± 0.1 1.6 ± 0.0 0.8 ± 0.0 1.6
 RNA 3′ phosphate AT1G48860.1 2.6 ± 0.0* 1.5 ± 0.0 1.1 ± 0.0 1.5 ± 0.2* 1.0 ± 0.2 0.5 ± 0.1 0.9
RNAses
 RNAse J AT5G63420.1 3.0 ± 0.2* 2.8 ± 0.1 1.1 ± 0.2 1.4 ± 0.0* 1.7 ± 0.1 0.9 ± 0.2 n.a
 CSP41B AT1G09340.1 2.3 ± 0.1 1.3 ± 0.1 0.7 ± 0.1 1.0 ± 0.1 0.8 ± 0.1 0.5 ± 0.1 0.4
 PRORP1 AT2G32230.1 1.9 ± 0.0* 1.8 ± 0.0 0.9 ± 0.0 1.7 ± 0.0* 1.8 ± 0.1 1.0 ± 0.3 n.a
  1. Notes: See notes of Table 1