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Table 2 Model profiling of common DEPs identified during the chilling and recovery treatment periods of 9311 and DC90

From: Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

UniProt_ID

Gene ID/Name

 

9311

  

DC90

 

Subcellular location

Putative function

0 h

Ca-60 h

Rb-60 h

PMc

0 h

Ca-60 h

Rb-60 h

PMc

CPd

UniPe

Q10NM5

LOC_Os03g15870

0

−0.46

−0.58

0

0

− 0.93

− 0.32

1

Y

–

50S ribosomal protein L4, chloroplast, putative

Q2QN11

LOC_Os12g39360

0

−0.2

− 0.3

0

0

−0.33

− 0.27

4

–

–

Eukaryotic aspartyl protease family protein

Q650W6

Os09g0565200

0

−0.12

−0.32

2

0

−0.31

−0.48

0

Y

–

Similar to nucleic acid-binding protein precursor

Q7X8A1

Os04g0459500

0

−0.11

−0.31

2

0

−0.33

−0.38

4

Y

–

Glyceraldehyde-3-phosphate dehydrogenase

Q0IWS0

Os10g0492300

0

−0.1

− 0.27

2

0

−0.27

− 0.27

4

Y

–

Similar to IAP100

Q7X7H3

Os04g0490800

0

−0.12

−0.28

3

0

−0.23

−0.38

0

Y

–

OSJNBa0076N16.12 protein

O64422

Os03g0267300

0

−0.13

−0.28

3

0

−0.27

−0.37

0

Y

C

Fructose-1,6-bisphosphatase, chloroplastic

Q943K1

Os01g0869800

0

−0.25

−0.43

3

0

−1.07

−0.59

1

Y

–

22-kDa photosystem II protein, photoprotection

Q8S3R2

Os02g0707100

0

−0.17

− 0.32

3

0

−0.45

− 0.25

1

–

–

Similar to monodehydroascorbate reductase, seedling isozyme (EC 1.6.5.4) (MDAR seedling)

Q0DGH0

Os05g0533100

0

−0.19

−0.36

3

0

−0.6

0.03

5

–

–

Similar to plasminogen activator inhibitor 1 RNA-binding protein

P0C367

psbC

0

−0.34

−0.34

4

0

−0.66

−0.32

1

–

C

Photosystem II CP43 reaction center protein

P0C364

psbB

0

−0.35

−0.34

4

0

−0.88

−0.43

1

–

C

Photosystem II CP47 reaction center protein

P0C434

psbA

0

−0.35

−0.38

4

0

−1.08

−0.44

1

–

C

Photosystem II protein D1

A0A0N7KJ79

Os04g0473150

0

−0.57

− 0.51

4

0

−1.35

−0.7

1

–

–

Similar to photosystem II protein D1

Q8SAY0

RPL18

0

−0.42

−0.36

4

0

−0.8

−0.29

1

Y

C

50S ribosomal protein L18, chloroplastic

Q9ZST0

RPL5

0

−0.43

−0.42

4

0

−1.14

−0.32

1

Y

C

50S ribosomal protein L5, chloroplastic

Q9XJ28

rps9

0

−0.49

−0.5

4

0

−0.88

−0.19

5

Y

–

30S ribosomal protein S9, chloroplast, putative

Q6KA00

Os02g0822600

0

−0.56

−0.47

4

0

−1.06

−0.24

5

Y

–

Similar to 50S ribosomal protein L9

P0C355

psaA

0

−0.24

− 0.27

4

0

−1.01

−0.21

5

–

C

Photosystem I P700 chlorophyll a apoprotein A1

P12330

CAB1R

0

0.6

0.55

11

0

0.6

−0.79

9

Y

C

Chlorophyll a/b-binding protein 1, chloroplastic

Q10LF1

LOC_Os03g22950

0

0.67

0.64

11

0

0.74

0.15

10

Y

–

Acyl carrier protein

O22386

RPL12–2

0

0.37

0.34

11

0

0.67

0.23

14

Y

C

50S ribosomal protein L12, chloroplastic

Q6ZKC0

GF14C

0

0.5

0.39

11

0

0.52

0.18

14

–

Cyt

14–3-3-like protein GF14-C

Q06967

GF14F

0

0.42

0.38

11

0

0.57

0.28

14

–

Cyt

14–3-3-like protein GF14-F

Q10KY5

Os033g0366000

0

0.41

0.43

11

0

0.46

0.2

14

–

–

10 kDa chaperonin, putative, expressed

Q8H2U6

Os07g0661700

0

0.76

0.79

11

0

0.87

0.61

14

–

–

Conserved hypothetical protein

A0A0P0V9F2

Os01g0803200

0

0.59

0.61

11

0

0.67

0.46

14

–

–

Cysteine proteinase inhibitor (Fragment)

Q0JPA6

Os01g0233000

0

0.53

0.54

11

0

0.7

0.35

14

–

–

Salt stress root protein RS1

Q6K1Q5

Os02g0622400

0

0.53

0.45

11

0

0.42

0.27

14

–

–

Glycolipid transfer protein-like

Q07661

NDKR

0

0.52

0.59

11

0

0.64

0.44

14

–

–

Nucleoside diphosphate kinase 1

Q2QWN3

Os12g0189400

0

0.34

0.29

11

0

0.36

0.24

14

Y

–

Similar to photosystem I reaction center subunit N, chloroplast precursor (PSI- N)

Q7XXS0

Os08g0478200

0

0.31

0.25

11

0

0.6

0.22

14

–

M

ATP synthase subunit d, mitochondrial

Q8LNF2

Os10g0502000

0

0.27

0.2

11

0

0.44

0.13

14

Y

–

Similar to thylakoid lumenal 17.4 kDa protein

Q6ETK1

Os02g0180200

0

0.27

0.26

11

0

0.39

0.17

14

Y

–

Uncharacterized protein family UPF0133 domain-containing protein

Q6K623

Os02g0612900

0

0.26

0.46

12

0

0.4

0.33

11

–

–

Similar to temperature stress-induced lipocalin

Q0IZF1

Os09g0572700

0

0.13

0.35

13

0

0.32

0.14

14

–

–

Similar to blue copper-binding protein

Q2QND8

Os12g0569300

0

0.13

0.37

13

0

0.42

0.23

14

Y

–

Thaumatin, pathogenesis-related family protein

Q8S9Q6

Os01g0941200

0

0.09

0.27

13

0

0.32

0.11

14

–

–

Similar to glucan endo-1,3-beta-glucosidase GII precursor (EC 3.2.1.39)

A0A0P0X334

Os07g0176900

0

0.29

0.18

14

0

0.3

−0.12

9

Y

–

Similar to ribose-5-phosphate isomerase precursor

Q6YS11

Os08g0282400

0

0.42

0.29

14

0

0.79

0.21

10

–

–

Similar to alpha-SNAP (fragment)

Q6ESR4

P0684A08.9–1

0

0.37

0.2

14

0

0.3

0.32

11

–

–

Dehydration-stress inducible protein 1

Q5ZCK5

CML16

0

0.34

0.18

14

0

0.57

0.53

11

–

–

Probable calcium-binding protein CML16

  1. Notes: a indicates chilling stress treatment; b indicates recovery treatment; c designates Profile Model of DEPs, obtained by using STEM; d designates the subcellular locations of DEPs predicted by using ChloroP; e designates information on the subcellular locations of DEPs annotated in the UniProt database
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BMC Plant Biology

ISSN: 1471-2229

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