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Table 2 Model profiling of common DEPs identified during the chilling and recovery treatment periods of 9311 and DC90

From: Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress

UniProt_ID Gene ID/Name   9311    DC90   Subcellular location Putative function
0 h Ca-60 h Rb-60 h PMc 0 h Ca-60 h Rb-60 h PMc CPd UniPe
Q10NM5 LOC_Os03g15870 0 −0.46 −0.58 0 0 − 0.93 − 0.32 1 Y 50S ribosomal protein L4, chloroplast, putative
Q2QN11 LOC_Os12g39360 0 −0.2 − 0.3 0 0 −0.33 − 0.27 4 Eukaryotic aspartyl protease family protein
Q650W6 Os09g0565200 0 −0.12 −0.32 2 0 −0.31 −0.48 0 Y Similar to nucleic acid-binding protein precursor
Q7X8A1 Os04g0459500 0 −0.11 −0.31 2 0 −0.33 −0.38 4 Y Glyceraldehyde-3-phosphate dehydrogenase
Q0IWS0 Os10g0492300 0 −0.1 − 0.27 2 0 −0.27 − 0.27 4 Y Similar to IAP100
Q7X7H3 Os04g0490800 0 −0.12 −0.28 3 0 −0.23 −0.38 0 Y OSJNBa0076N16.12 protein
O64422 Os03g0267300 0 −0.13 −0.28 3 0 −0.27 −0.37 0 Y C Fructose-1,6-bisphosphatase, chloroplastic
Q943K1 Os01g0869800 0 −0.25 −0.43 3 0 −1.07 −0.59 1 Y 22-kDa photosystem II protein, photoprotection
Q8S3R2 Os02g0707100 0 −0.17 − 0.32 3 0 −0.45 − 0.25 1 Similar to monodehydroascorbate reductase, seedling isozyme (EC 1.6.5.4) (MDAR seedling)
Q0DGH0 Os05g0533100 0 −0.19 −0.36 3 0 −0.6 0.03 5 Similar to plasminogen activator inhibitor 1 RNA-binding protein
P0C367 psbC 0 −0.34 −0.34 4 0 −0.66 −0.32 1 C Photosystem II CP43 reaction center protein
P0C364 psbB 0 −0.35 −0.34 4 0 −0.88 −0.43 1 C Photosystem II CP47 reaction center protein
P0C434 psbA 0 −0.35 −0.38 4 0 −1.08 −0.44 1 C Photosystem II protein D1
A0A0N7KJ79 Os04g0473150 0 −0.57 − 0.51 4 0 −1.35 −0.7 1 Similar to photosystem II protein D1
Q8SAY0 RPL18 0 −0.42 −0.36 4 0 −0.8 −0.29 1 Y C 50S ribosomal protein L18, chloroplastic
Q9ZST0 RPL5 0 −0.43 −0.42 4 0 −1.14 −0.32 1 Y C 50S ribosomal protein L5, chloroplastic
Q9XJ28 rps9 0 −0.49 −0.5 4 0 −0.88 −0.19 5 Y 30S ribosomal protein S9, chloroplast, putative
Q6KA00 Os02g0822600 0 −0.56 −0.47 4 0 −1.06 −0.24 5 Y Similar to 50S ribosomal protein L9
P0C355 psaA 0 −0.24 − 0.27 4 0 −1.01 −0.21 5 C Photosystem I P700 chlorophyll a apoprotein A1
P12330 CAB1R 0 0.6 0.55 11 0 0.6 −0.79 9 Y C Chlorophyll a/b-binding protein 1, chloroplastic
Q10LF1 LOC_Os03g22950 0 0.67 0.64 11 0 0.74 0.15 10 Y Acyl carrier protein
O22386 RPL12–2 0 0.37 0.34 11 0 0.67 0.23 14 Y C 50S ribosomal protein L12, chloroplastic
Q6ZKC0 GF14C 0 0.5 0.39 11 0 0.52 0.18 14 Cyt 14–3-3-like protein GF14-C
Q06967 GF14F 0 0.42 0.38 11 0 0.57 0.28 14 Cyt 14–3-3-like protein GF14-F
Q10KY5 Os033g0366000 0 0.41 0.43 11 0 0.46 0.2 14 10 kDa chaperonin, putative, expressed
Q8H2U6 Os07g0661700 0 0.76 0.79 11 0 0.87 0.61 14 Conserved hypothetical protein
A0A0P0V9F2 Os01g0803200 0 0.59 0.61 11 0 0.67 0.46 14 Cysteine proteinase inhibitor (Fragment)
Q0JPA6 Os01g0233000 0 0.53 0.54 11 0 0.7 0.35 14 Salt stress root protein RS1
Q6K1Q5 Os02g0622400 0 0.53 0.45 11 0 0.42 0.27 14 Glycolipid transfer protein-like
Q07661 NDKR 0 0.52 0.59 11 0 0.64 0.44 14 Nucleoside diphosphate kinase 1
Q2QWN3 Os12g0189400 0 0.34 0.29 11 0 0.36 0.24 14 Y Similar to photosystem I reaction center subunit N, chloroplast precursor (PSI- N)
Q7XXS0 Os08g0478200 0 0.31 0.25 11 0 0.6 0.22 14 M ATP synthase subunit d, mitochondrial
Q8LNF2 Os10g0502000 0 0.27 0.2 11 0 0.44 0.13 14 Y Similar to thylakoid lumenal 17.4 kDa protein
Q6ETK1 Os02g0180200 0 0.27 0.26 11 0 0.39 0.17 14 Y Uncharacterized protein family UPF0133 domain-containing protein
Q6K623 Os02g0612900 0 0.26 0.46 12 0 0.4 0.33 11 Similar to temperature stress-induced lipocalin
Q0IZF1 Os09g0572700 0 0.13 0.35 13 0 0.32 0.14 14 Similar to blue copper-binding protein
Q2QND8 Os12g0569300 0 0.13 0.37 13 0 0.42 0.23 14 Y Thaumatin, pathogenesis-related family protein
Q8S9Q6 Os01g0941200 0 0.09 0.27 13 0 0.32 0.11 14 Similar to glucan endo-1,3-beta-glucosidase GII precursor (EC 3.2.1.39)
A0A0P0X334 Os07g0176900 0 0.29 0.18 14 0 0.3 −0.12 9 Y Similar to ribose-5-phosphate isomerase precursor
Q6YS11 Os08g0282400 0 0.42 0.29 14 0 0.79 0.21 10 Similar to alpha-SNAP (fragment)
Q6ESR4 P0684A08.9–1 0 0.37 0.2 14 0 0.3 0.32 11 Dehydration-stress inducible protein 1
Q5ZCK5 CML16 0 0.34 0.18 14 0 0.57 0.53 11 Probable calcium-binding protein CML16
  1. Notes: a indicates chilling stress treatment; b indicates recovery treatment; c designates Profile Model of DEPs, obtained by using STEM; d designates the subcellular locations of DEPs predicted by using ChloroP; e designates information on the subcellular locations of DEPs annotated in the UniProt database