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Table 1 Details of identified potential functional partners of AtRboh proteins

From: In silico insights on diverse interacting partners and phosphorylation sites of respiratory burst oxidase homolog (Rbohs) gene families from Arabidopsis and rice

Rbohs Functional Partners Types of evidence for the association Score
  S.No. Name Gene ID Description UniProt ID Length (aa) Neizghborhood Gene Fusion Co-occurrence Experiments Databases Textmining Homology  
AtRbohA 1. ATCDPK1 AT1G18890.1 Calcium Dependent Protein Kinase 1; induced by dehydration and high salt Q9M9V8a 545      P P   0.816
2. CDPK19 AT5G19450.1 Calcium Dependent Protein Kinase 19 Q42438a 533      P P   0.812
3. CPK1 AT5G04870.1 Calcium Dependent Protein Kinase 1; phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense Q06850a 610      P P   0.811
4. CDPK9 AT5G23580.1 Calcium Dependent Protein Kinase 9 Q42396a 490      P P   0.808
5. CPK13 AT3G51850.1 Calcium Dependent Protein Kinase 13 Q8W4I7a 528      P P   0.808
6. ATCDPK2 AT1G35670.1 Calcium Dependent Protein Kinase 2; induced by drought and high-salt stress but not by low-temperature or heat stress; regulate ABA signal transduction Q39016a 495      P P   0.807
7. CPK26 AT4G38230.1 Calcium Dependent Protein Kinase 26 Q9SZM3a 340      P    0.8
8. CPK5 AT4G35310.1 Calcium Dependent Protein Kinase 5 Q38871a 556      P    0.8
9. CDPK6 AT4G23650 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q42479a 529      P    0.8
10. CPK15 AT4G21940.1 Calcium Dependent Protein Kinase 15 O49717a 554      P    0.8
AtRbohB 1. CPK6 AT2G17290.1 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q38872a 544       P   0.467
2. ARAC6 AT4G35950.1 Rac-like 6; a member of ROP GTPases gene family-like, GTP binding protein; involved in cell polarity control during the actin-dependent tip growth of pollen tubes Q9SBJ6a 197       P   0.44
3. PGP14 AT1G28010.1 P-GlycoProtein 14; ABC transporter B family member 14 Q9C7F2a 1247       P   0.408
4. OST1 AT4G33950.1 Open Stomata 1; regulation of stomatal aperture by ABA and acts upstream of ROS production; regulation of seed germination and root growth; dehydration stress Q940H6a 362       P   0.408
5. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
6. SDH2-2 AT5G40650.1 One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex; expressed during germination and post-germinative growth Q8LB02a 280       P   0.407
7. UVH6 AT1G03190.2 UltraViolet Hypersensitive 6 (ATP-dependent DNA repair helicase); may negatively regulate a common response program mediated by UV damage and heat stress, that leads to tissue death and reduced chloroplast function Q8W4M7a 758       P   0.406
8. AT5G09550 AT5G09550.1 RAB GDP-dissociation inhibitor; regulation of GTPase activity, protein transport Q9LXC0a 445       P   0.405
AtRbohC 1. COW1 AT4G34580.1 Can Of Worms1; phosphatidylinositol/phosphatidylcholine transfer protein essential for root hair tip growth F4JLE5a 554       P   0.923
2. RHD4 AT3G51460.1 Root Hair Defective 4; phosphatidylinositol-4-phosphate phosphatase required for root hair development Q9C5G5a 597       P   0.919
3. RHD3 AT3G13870.1 Root Hair Defective 3; required for regulated cell expansion and normal root hair development P93042a 802       P   0.919
4. CSLD3 AT3G03050.1 Cellulose Synthase-Like D3; required for synthesis of a cell wall polysaccharide essential for root hair elongation, but not initiation Q9M9M4a 1145       P   0.79
5. RHD1 AT1G64440.1 Root Hair Defective 1(UDP-glucose 4-epimerase 4); involved in growth and cell wall carbohydrate biosynthesis Q9C7W7a 348       P   0.79
6. SHV2 AT5G49270.1 Shaven 2 (predicted GPI-anchored protein); involved in successfully establishing tip growth in root hairs Q0WRJ1 663       P   0.788
7. SHV3 AT4G26690.1 Shaven 3 (glycerophosphoryl diester phosphodiesterase 2); cell wall cellulose accumulation and pectin linking; impacts root hair, trichome and epidermal cell development Q9SZ11a 759       P   0.784
8. ROP2 AT1G20090.1 Rho-related protein Of Plants 2; RAC-like GTP-binding protein; its expression is stimulated by brassinosteroid treatment and inhibit light-induced stomatal opening Q0WU07 195       P   0.72
9. LRX1 AT1G12040.1 Leucine-Rich repeat extensin-like protein 1; regulates root hair morphogenesis and elongation O65375a 744       P   0.657
10. MRH2 AT3G54870.1 Morphogenesis of Root Hair 2 (Armadillo repeat-containing kinesin-like protein 1); control root hair tip growth by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules Q9SV36a 941       P   0.651
AtRbohD 1. CPK6 AT2G17290.1 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q38872a 544      P P   0.894
2. ATCDPK1 AT1G18890.1 Calcium Dependent Protein Kinase 1; induced by dehydration and high salt Q9M9V8a 545     P P P   0.879
3. CDPK19 AT5G19450.1 Calcium Dependent Protein Kinase 19 Q42438a 533      P P   0.873
4. ATCDPK2 AT1G35670.1 Calcium Dependent Protein Kinase 2; induced by drought and high-salt stress but not by low-temperature or heat stress; regulate ABA signal transduction Q39016a 495      P P   0.873
5. CPK1 AT5G04870.1 Calcium Dependent Protein Kinase 1; phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense Q06850a 610     P P P   0.872
6. CPK13 AT3G51850.1 Calcium Dependent Protein Kinase 13 Q8W4I7a 528      P P   0.865
7. CDPK9 AT5G23580.1 Calcium Dependent Protein Kinase 9 Q42396a 490      P P   0.865
8. CPK4 AT4G09570.1 Calcium Dependent Protein Kinase 4; phosphorylates ABA-responsive transcription factors ABF1 and ABF4 in vitro Q38869a 501     P P P   0.841
9.. CDPK6 AT4G23650 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q42479a 529      P P   0.83
10. CPK23 AT4G04740.1 Calcium Dependent Protein Kinase 23; induced by drought and salt stress Q9M101a 520      P P   0.81
AtRbohE 1. DGL AT1G05800.1 Dongle (galactolipase); catalyzes the initial step of JA biosynthesis and for the biosynthesis of basal-level endogenous jasmonate in vegetative tissues, regulates leaves growth, but not essential for jasmonate biosynthesis after wounding or upon pathogen infection Q9MA46a 471       P   0.436
2. CYP707A4 AT3G19270.1 Abscisic acid 8'-hydroxylase 4; involved in ABA catabolism Q9LJK2a 468       P   0.409
3. ATEXPA2 AT5G05290.1 Expansin-A2; causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans Q38866a 255       P   0.408
4. AT1G17680 AT1G17680.2 Transcription factor-related (putative uncharacterized protein) Q56YL8 896       P   0.408
5. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
6. GA20OX3 AT5G07200.1 Gibberellin 20 oxidase 3 (YAP169); biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton Q39112a 380       P   0.406
7. GLP4 AT1G18970.1 Germin-Like Protein 4; may play role in plant defense P92995a 220       P   0.406
AtRbohF 1. OST1 AT4G33950.1 Open Stomata 1; regulation of stomatal aperture by ABA and acts upstream of ROS production; regulation of seed germination and root growth; dehydration stress Q940H6a 362     P   P   0.99
2. CPK6 AT2G17290.1 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q38872a 544    P   P P   0.921
3. CDPK6 AT4G23650 Calcium Dependent Protein Kinase 6; ABA regulation of guard cell S-type anion-and Ca(2+)-permeable channels and stomatal closure Q42479a 529      P P   0.865
4. ATCDPK1 AT1G18890.1 Calcium Dependent Protein Kinase 1; induced by dehydration and high salt Q9M9V8a 545    P   P P   0.856
5. CPK23 AT4G04740.1 Calcium Dependent Protein Kinase 23; induced by drought and salt stress Q9M101a 520      P P   0.848
6. ATCDPK2 AT1G35670.1 Calcium Dependent Protein Kinase 2; induced by drought and high-salt stress but not by low-temperature or heat stress; regulate ABA signal transduction Q39016a 495      P P   0.838
7. CPK21 AT4G04720.1 Calcium Dependent Protein Kinase 21; mediates the phosphorylation and activation of the S-type anion efflux channel SLAC1. Q9ZSA2a 531      P P   0.834
8. CDPK19 AT5G19450.1 Calcium Dependent Protein Kinase 19 Q42438a 533      P P   0.831
9. CPK13 AT3G51850.1 Calcium Dependent Protein Kinase 13 Q8W4I7a 528      P P   0.831
10. CDPK9 AT5G23580.1 Calcium Dependent Protein Kinase 9 Q42396a 490      P P   0.828
AtRbohG 1. AT5G54130 AT5G54130.2 Calcium-binding EF hand family protein Q8GUH8 436       P   0.679
2. AT3G61720 AT3G61720.1 C2 domain-containing protein; calcium-dependent plant phosphoribosyltransferase family protein Q9M366 795       P   0.679
3. AILP1 AT5G19140.1 Plasma membrane protein; unknown function; response to aluminum ion and auxin stimulus Q2V367b, Q94BR2 234       P   0.659
4. AT1G19840 AT1G19840.1 Auxin-responsive family protein; auxin responsive SAUR (Small auxin-up RNA) protein Q9FXI2 153       P   0.659
5. AT1G26270 AT1G26270.1 Phosphatidylinositol 4-kinase gamma 5 Q9C671a 630       P   0.625
6. CIPK25 AT5G25110.1 CBL-Interacting Protein Kinase 25 Q8W1D5a 488       P   0.597
7. AT1G76640 AT1G76640.1 Calcium-binding protein CML39; developmental and stimulus-induced expression Q9SRE7a 159       P   0.567
8. AT5G07580 AT5G07580.1 Ethylene-responsive transcription factor ERF106; binds to the GCC-box pathogenesis-related promoter element Q9LY05a 274       P   0.536
9. AT2G17500 AT2G17500.2 Auxin efflux carrier family protein Q8LGC5 396       P   0.416
10. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
AtRbohH 1. ATRDH2 AT1G16460.2 Rhodanese Homologue 2 (thiosulfate/3-mercaptopyruvate sulfurtransferase 2); involved in embryo and seed development Q24JL3a 342       P   0.458
2. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
3. GLP4 AT1G18970.1 Germin-Like Protein 4; may play role in plant defense P92995a 220       P   0.408
AtRbohI 1. AT4G11270 AT4G11270.1 Transducin family protein / WD-40 repeat family protein Q67XA6 1446       P   0.819
2. TOPP7 AT4G11240.1 Serine/threonine-protein phosphatase PP1 isozyme 6 P48486a 322       P   0.679
3. AGL52 AT4G11250.1 MADS-box protein AGL52; transcription factor activity Q9SUT6 329       P   0.659
4. BTI2 AT4G11220.1 Virb2-Interacting Protein 2 (reticulon-like protein) B9DHX9 271       P   0.468
5. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
6. CYP707A4 AT3G19270.1 Abscisic acid 8'-hydroxylase 4; involved in ABA catabolism Q9LJK2a 468       P   0.405
AtRbohJ 1. AT4G33160 AT4G33160.1 Ubiquitin-protein ligase (F-box only protein 13) Q9SMZ3a 457       P   0.823
2. AT3G28220 AT3G28220.1 Meprin and TRAF homology domain-containing protein / MATH domain-containing protein; response to salt stress Q9LHA6 370       P   0.823
3. AT4G38220 AT4G38220.2 Aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase Q3E9P0b 433       P   0.746
4. AT3G33530 AT3G33530.2 Transducin family protein / WD-40 repeat family protein Q9SRK1 1358       P   0.679
5. MT2B AT5G02380.1 Metallothionein 2B; cysteine-rich protein with copper-binding activity Q8LDX5 77       P   0.534
6. MTPA2 AT3G58810.1 Metal Tolerance Protein A2; member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Q3EAH9 432       P   0.467
7. CZF1 AT2G40140.1 Zinc finger CCCH domain-containing protein 29; transcription factor activity; regulate salt stress Q9XEE6a 597       P   0.462
8. HMA4 AT2G19110.1 Heavy metal transporter; involved in cadmium/zinc transport Q0WLA3 1172       P   0.409
9. RAP2.1 AT1G46768.1 Ethylene-responsive transcription factor RAP2-1; binds to the GCC-box pathogenesis-related promoter element Q8LC30a 153       P   0.409
10. AT2G35040 AT2G35040.1 AICARFT/IMPCHase bienzyme family protein; phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; response to cold, purine nucleotide biosynthetic process O64767 596       P   0.408
  1. a: Reviewed UniProt ID; b: Deleted entry; P: Present