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Table 1 Statistics of Arachis spp. reads mapped onto the A. duranensis reference genome and analysis of the differentially expressed genes (DEGs) under RKN infection against the control

From: Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance

Librarya Number of mapped genes % of mapped reads Number of mapped genes % of mapped reads Number of LDEG (FDR < 0.05) Number of DEG (FDR < 0.05) (Log2FC >2 or < -2)
Replicate 1 Replicate 2
DCTR 25,096 97.58 25,023 97.82 N/A N/A
DN3 25,338 97.42 25,389 97.95 2,078 124
DN6 25,466 98.01 24,999 97.97 791 61
DN9 24,969 97.83 24,564 97.76 685 46
SCTR 22,914 96.39 22,375 96.89 N/A N/A
SN3 21,602 95.4 22,237 96.37 472 79
SN6 21,337 94.81 21,914 95.88 2,314 472
SN9 22,193 96.39 21,615 96.31 479 128
  1. a Different time points after M. arenaria inoculation in A. duranensis DCTR – control; DN3 – 3 DAI; DN6 – 6 DAI; DN9 – 9 DAI; and A. stenosperma SCTR – control; SN3 – 3 DAI; SN6 – 6 DAI; SN9 9 DAI. N/A – Not Applied