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Table 3 QTL information for plant height and technical length in two populations

From: Consensus genetic linkage map construction and QTL mapping for plant height-related traits in linseed flax (Linum usitatissimum L.)

QTL name LG Position Closet marker LOD Additive R2 LOD2_L LOD2_R Trait Environment Candidate gene Gene annotation
MH population
uq.C1–1 1 28.51 Lu1_695389 3.71 1.57 12.76 27.5 30.5 TL Yuanmou Lus10012562,Lus10016188 Unknown function; COBRA-like protein
uq.C4–1 4 24.41 Lu4_300701 3.07 2.28 25.7 24.1 24.4 PH Langfang Lus10041481 Multicopper oxidase
uq.C5–1 5 52.51 Lu5_8504 3.89 1.95 25.31 52.2 53.3 PH,TL Langfang, Jingtai Lus10007137 large subunit ribosomal protein L13Ae
uq.C6–1 6 19.81 Lu6_639236 3.63 1.79–2.03 16.21–22.47 17.8 24 PH,TL Yuanmou Lus10034082,Lus10017587, Lus10019435 Proline-rich receptor-like protein kinase perk; carboxylesterase 17-related;oxidoreductase
uq.C8–1 8 10.11 Lu8_646184 3.62 1.25 8.16 9.6 10.4 TL Jingtai Lus10011957 nucleosome assembly protein 1-like 1
uq.C8–2 8 81.21 Lu8_185009 5.09 −2.16 19.08 80.6 82.1 PH,TL Jingtai   
uq.C8–3 8 93.41 Lu8_119488 3.14 −1.97 25.98 92.2 96.5 PH Langfang Lus10012249,Lus10012252 fanconi anemia group J protein;high mobility group protein 2-related
uq.C11–1 11 46.91 Lu11_557617 3.3 −1.88 22.19 46.6 47.7 PH Langfang Lus10038920 monocopper oxidase-like protein sks1-related
uq.C12–1 12 34.31 Lu12_696508 2.7–4.8 −4.53 18.71–23.54 2.8 36.7 PH,TL Langfang, Lanzhou, Yuanmou Lus10036228,Lus10036227,Lus10036229, Lus10036247,Lus10023392 Ribosomal protein L7/L12-related; UDP-N-acetylglucosamine pyrophosphorylase; choline-phosphate cytidylyltransferase; F21O3.9 Protein-related;protein LSD1
uq.C14–1 14 32.61 Lu14_231853 3.94–7.26 2.56–3.08 20.62–26.94 32 33.1 PH, TL Langfang,Lanzhou, Yuanmou Lus10015608,Lus10015614 MYB domain protein 26; insoluble isoenzyme cwinv1-related
PH population
uq.C1–1 1 17.61 Lu1_396428 3.79 −1.84 21.11 16.2 17.9 PH Langfang Lus10027782,Lus10016188, Lus10027887 Laccase-10-related;COBRA-related protein 6; Wax ester synthase-like Acyl-CoA acyltransferase domain; Wax ester synthase-like Acyl-CoA acyltransferase domain
uq.C2–2 2 96.71 Lu2_597057 6.79 1.77 10.29 94.6 97.9 TL Jingtai Lus10014561,Lus10014535, Lus10030692 glycosylphosphatidylinositol transamidase; Formate dehydrogenase
uq.C3–1 3 23.41 Lu3_693423 4.05 −2.42 20.53 20.9 24.2 PH Lanzhou   
uq.C7–1 7 12.31 Lu7_781312 3.04 3.67 73.41 5.8 15.7 TL Yuanmou   
uq.C9–1 9 41.41 Lu9_503128 6.43 2.68 21.83 40.9 46.4 PH Yuanmou, Langfang Lus10002031,Lus10015623 Unknown function; fatty acid omega-hydroxy dehydrogenase
uq.C9–2 9 56.21 Lu9_618122 3.43 1.22 10.53 51.9 58.7 TL Jingtai   
uq.C11–1 11 37.41 Lu11_447048 4.54 −2.32 22.91 36.9 38 PH Langfang Lus10038920 monocopper oxidase-like protein sks1-related
uq.C12–1 12 2.01 Lu12_163596 3.44 −2.23 21.84 0 3.6 PH Lanzhou Lus10031416 Nicotianamine synthase
uq.C13–1 13 54.91 Lu13_367183 3.34 3.21 68.2 53.8 56.7 PH Yuanmou Lus10026439,Lus10026441 Threonine-specific protein kinase; peptidyl-prolyl cis-trans isomerase SDCCAG10
  1. LOD2_L/R: Confidence interval in 95% significance level; TL: technical length; PH: Plant height