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Table 2 Mutation sites in chlorophyll-deficient mutant (cdm) and wild-type (WT) compared with the reference genome

From: A missense mutation of plastid RPS4 is associated with chlorophyll deficiency in Chinese cabbage (Brassica campestris ssp. pekinensis)

Location in Ref genome

Region

Mutation type

Reference

FT

cdm

265

trnH-psbA spacer

SNP

A

T

T

266

trnH-psbA spacer

SNP

A

T

T

267

trnH-psbA spacer

SNP

A

T

T

268

trnH-psbA spacer

SNP

A

T

T

20,164

rpoC1 coding region

SNP

C

T

T

44,398

rps4 coding region

SNP

A

A

C

66,083

psaJ-rpl33 spacer

SNP

A

T

T

66,084

psaJ-rpl33 spacer

SNP

G

T

T

66,085

psaJ-rpl33 spacer

SNP

A

C

C

66,086

psaJ-rpl33 spacer

SNP

A

T

T

116,457

psaC coding region

SNP

G

A

A