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Table 2 Evaluation of tissue GRNs generated by GENIE3

From: Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize

KN1

AUROC

AUPR

FEA4

AUROC

AUPR

O2

AUROC

AUPR

Random

0.500

0.108

random

0.500

0.103

random

0.500

0.061

SAM

0.558

0.187

leaf

0.545

0.147

seed

0.496

0.07

Seed

0.554

0.193

root

0.541

0.14

   
   

SAM

0.56

0.171

   
   

seed

0.533

0.15

   
  1. AUROC and AUPR values were calculated tissue GRNs using three TFs’ ChIP-Seq data (KN1, FEA4 and O2). The random networks (random) were permutated 10,000 times. The leaf, root, SAM and seed refer to tissue-specific GRN