Table 2 Assembly statistics after successive filtering by IsoPct and FPKM, Swiss-prot annotations, and Decon-Seq
From: Parallel evolution of storage roots in morning glories (Convolvulaceae)
| Â | I. batatas | I. trifida | D. dissectus | D. quinquefolius |
|---|---|---|---|---|
Transcripts in original assembly | 245,140 | 119,153 | 254,174 | 363,820 |
Transcripts filtered by IsoPct, FPKM | 158,267 (64.6%) | 51,181 (43.0%) | 176,584 (69.5%) | 209,593 (57.6%) |
Transcripts filtered by Swiss-prot annotations | 5097 (2.1%) | 5262 (4.4%) | 3529 (1.4%) | 3665 (1.0%) |
Transcripts filtered by Decon-Seq | 619 (0.3%) | 491 (0.4%) | 441 (0.2%) | 595 (0.2%) |
Total removed by filtering | 163,983 (66.9%) | 56,934 (47.8%) | 180,554 (71.0%) | 213,853 (58.8%) |