Table 1 Description of 20 EST-SSR markers used to classify 180-accession panel of Ocimum spp.
From: Population structure, genetic diversity and downy mildew resistance among Ocimum species germplasm
MarkerID | Genbank/Contg ID | Repeat Motif | Alleles | PIC | Product Size | LG | Position (cM) |
|---|---|---|---|---|---|---|---|
OBNJR2sg33 | DY333933 | (AC)16 | 19 | 0.01-0.45 | 271-299 | 14 | 82.7 |
OBNJR2cn29 | Contig1138 | (AC)16 | 11 | 0.02-0.45 | 246-448 | 13 | 54.6 |
OBNJR2sg04 | DY343638 | (GA)17 | 27 | 0.01-0.48 | 268-357 | 13 | 40.2 |
OBNJR2sg30 | DY336727 | (AG)22 | 20 | 0.01-0.42 | 241-279 | Â | Â |
OBNJR3sg124 | DY331703 | (GCC)6 | 11 | 0.01-0.40 | 161-327 | Â | Â |
OBNJR3sg19 | DY343509 | (TCA)6 | 6 | 0.01-0.46 | 195-432 | 6 | 18.9 |
OBNJR3cn298 | Contig2510 | (CTA)6 | 9 | 0.01-0.42 | 298-322 | Â | Â |
OBNJR3cn359 | Contig2911 | (GGC)6 | 11 | 0.01-0.31 | 161-292 | Â | Â |
OBNJR3cn362 | Contig2969 | (TGA)6 | 7 | 0.02-0.45 | 225-243 | 3 | 78.0 |
OBNJR3sg155 | DY325572 | (GTT)7 | 8 | 0.02-0.40 | 188-263 | Â | Â |
OBNJR3sg168 | DY323726 | (GAA)7 | 11 | 0.01-0.44 | 297-390 | Â | Â |
OBNJR3sg113 | DY335879 | (CCT)7 | 12 | 0.01-0.32 | 313-392 | Â | Â |
OBNJR3cn56 | Contig582 | (AGG)7 | 10 | 0.01-0.45 | 169-240 | 3 | 84.7 |
OBNJR3cn74 | Contig715 | (CAG)7 | 12 | 0.01-0.43 | 211-244 | Â | Â |
OBNJR3sg145 | DY328393 | (GCT)8 | 15 | 0.01-0.45 | 271-313 | Â | Â |
OBNJR3cn03 | Contig100 | (CCA)10 | 15 | 0.01-0.44 | 198-262 | Â | Â |
OBNJR3cn210 | Contig1890 | (AAG)11 | 14 | 0.01-0.43 | 266-302 | Â | Â |
OBNJR3cn240 | Contig2142 | (ATA)16 | 24 | 0.01-0.37 | 254-370 | 19 | 88.7 |
OBNJR3sg13 | DY344184 | (ACA)10 | 14 | 0.01-0.36 | 271-312 | Â | Â |
OBNJR4cn17 | Contig2461 | (AAAT)5 | 13 | 0.01-0.41 | 164-365 | Â | Â |