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Table 2 Strongly up-regulated stress-responsive genes changes common to transgenic hairy B. napus cotyledons

From: The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

   Expression relative to Westar
ID Description AtGL3 line K-5-8 line
Biotic Stress
 bo5g027670 CORI1, ATHCOR1, ATCLH1 (CORONATINE-INDUCED 1); chlorophyllase 5.30E+07 21.57
 bra008224 pathogenesis-related thaumatin family protein 2.83 14.46
 bo2g069600 MLP28 (MLP-LIKE PROTEIN 28) 174.64 13.00
 bra007947 " 119.90 11.52
 bra016785 RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding 7.66 8.11
 bra008667 glycosyl hydrolase family 81 protein 6.06 7.46
 bo5g149860 CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) 46.71 5.28
 bra011734 ATRCCR | ACD2 (ACCELERATED CELL DEATH 2); red chlorophyll catabolite reductase 4.47 4.47
 bo9g163710 glycosyl hydrolase family 81 protein 7.85 3.96
 bo07027s010 HRT, RCY1, RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); binds nucleotides 3.46 3.84
 bra009184 NHL3 3.83 3.57
 bo7g087120 avirulence induced gene (AIG) protein, putative 3.49 3.26
Biotic Stress Signalling
 bra031065 TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding 5.35E+14 2.49E+08
 bo8g102890 " 369.12 66.76
 bo5g027170 " 4.17 12.21
Biotic Stress Regulation of Transcription
 bra027377 RSH2 (RELA-SPOT HOMOLOG 2); GTP diphosphokinase 4.97 5.09
 bo5g131760 " 3.24 3.25
PR proteins General
 bo8g091760 disease resistance protein (TIR-NBS-LRR class), putative 5.81 6.67
 bra005378 disease resistance family protein 3.09 6.40
 bo6g007620 molecular_function unknown; LOCATED IN: endomembrane system 3.94 5.00
 bo1g048080 disease resistance protein (NBS-LRR class), putative 1.23 3.75
PR proteins Protease Inhibitors
 bo6g010170 trypsin and protease inhibitor family protein / Kunitz family protein 165.56 3.67
 bo6g010250 " 11.99 3.54
 bo6g010100 " 113.13 3.33
 bra015999 " 78.81 3.25
 bra037702 trypsin inhibitor, putative 18.46 1.40
 bra016073 trypsin and protease inhibitor family protein / Kunitz family protein 49.47 1.07
Wounding
 bra034157 WI12, SAG20 (SENESCENCE ASSOCIATED GENE 20) 1.07E+301 1.07E+301
 bra029887 " 2.93E+05 4.53E+04
 bra010381 wound-responsive protein-related 6697.92 76.02
 bo7g111980 " 5.51 10.78
 bo8g054160 " 6.39 9.56
Abiotic Stress General
 bo01463s030 benzodiazepine receptor-related 1.90E+04 4.85E+05
 bra021442 " 798.78 32627.32
 bra007841 unknown protein 388.29 266.92
 bo8g099690 " 96.36 115.05
 bo4g154720 " 2.96 6.57
Heat responsive
 bo1g138440 DNAJ heat shock N-terminal domain-containing protein 1.25E+15 7.51E+23
 bo9g026330 DNAJ heat shock protein, putative 6642.31 1.68E+11
 bra037247 " 7768.93 1.62E+10
 bo7g117750 DNAJ heat shock N-terminal domain-containing protein (J11) 1.46E+08 7.57E+09
 bra039384 DNAJ heat shock N-terminal domain-containing protein 1238.27 1.74E+06
 bra011656 DNAJ heat shock N-terminal domain-containing protein (J11) 216.64 2.14E+04
 bo1g005990 " 415.52 1.04E+04
 bra034691 DNAJ heat shock N-terminal domain-containing protein 12.28 139.25
 bra017744 DNAJ heat shock N-terminal domain-containing protein (J11) 18.63 77.88
 bra020505 DNAJ heat shock protein, putative 8.76E+04 24.75
 bo5g132640 DNAJ heat shock N-terminal domain-containing protein 5.58 23.31
 bra011735 ATHSF4 | HSF4 (HEAT SHOCK FACTOR 4); DNA binding /transcription repressor 7.14E+04 18.15
 bra018216 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) 47.14 12.92
 bo2g158600 DNAJ heat shock protein, putative 788.57 7.39
 bo8g066630 Hsp70b (heat shock protein 70B); ATP binding 6.69 7.32
 bo4g169420 17.6 kDa class I small heat shock protein (HSP17.6B-CI) 13.24 7.18
 bo8g097710 DNAJ heat shock N-terminal domain-containing protein 3.07 5.16
 bra016644 Hsp70b (heat shock protein 70B); ATP binding 4.04 4.31
 bo1g134560 DNAJ heat shock N-terminal domain-containing protein 8.46 3.95
 bo2g029130 heat shock protein-related 4.61 3.81
 bra004457 DNAJ heat shock N-terminal domain-containing protein 2.72 3.75
 bra003592 J8; heat shock protein binding / unfolded protein binding 4.72 3.70
 bra020419 heat shock protein-related 4.29 3.60
 bo9g176930 DNAJ heat shock N-terminal domain-containing protein 4.42 3.46
 bo3g091720 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding 4.25 3.29
 bo8g102330 DNAJ heat shock family protein 4.19 3.10
Cold responsive
 bra017742 CSDP1 (cold shock domain protein 1); RNA/single/double-stranded DNA binding 1160.12 131.40
 bo7g117730 " 1.31E+14 8.31
 bra013087 WCOR413-LIKE, FL3-5A3 | COR413-PM1 14.61 2.84
Drought and salt responsive
 bo3g052160 early-responsive to dehydration protein-related / ERD protein-related 177.05 1.43E+11
 bra039623 ATCOAD (4-phosphopantetheine adenylyltransferase) 4.62 5.42
 bo6g004950 QUA2 | TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase 3.50 3.64
 bo4g154160 hydrophobic protein, putative / low temperature-salt responsive 3.15 3.24
Abiotic Stress unspecified
 bo8g052730 PHOS34 | universal stress protein (USP) family protein 9.63 35.62
 bo2g069600 MLP28 (MLP-LIKE PROTEIN 28) 174.64 13.00
 bo7g111350 PHOS34 | universal stress protein (USP) family protein 6.84 12.10
 bra007947 MLP28 (MLP-LIKE PROTEIN 28) 119.90 11.52
 bra008745 universal stress protein (USP) family protein 4.45 4.83
 bo5g002660 ozone-responsive stress-related protein, putative 4.21 4.15
 bra022721 PHOS34 | universal stress protein (USP) family protein 4.15 3.76
 bo9g165720 " 3.08 3.60
 bo3g039740 " 3.31 3.05
 bo6g020120 " 3.27 2.94
  1. aCotyledon values are arranged from highest expression to lowest expression within each functional category using the K-5-8 line.