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Table 1 Haplotype of BnaFRIs in a panel of 174 B. napus by INDEL markers

From: Sequence variation and functional analysis of a FRIGIDA orthologue (BnaA3.FRI) in Brassica napus

 

Fequency

INDELs

BnaA3.FRI

 

Promotera (29 bp)

Promoter (11 bp)

Exon1 (21 bp)

 mHAP1b

40 (22.99%)

+c

+

+

 mHAP2

106 (60.92%)

–

–

+

 mHAP3

25 (14.37%)

–

–

–

 mHAP4

3 (1.7%)

+

–

+

BnaA10.FRI

 

Exon1 (21 bp)

Exon1 (9 bp)

 

 mHAP1

89 (51.14%)

+

+

 

 mHAP2

37 (21.26%)

–

–

 

 mHAP3

48 (27.59%)

+

–

 

BnaC3.FRI

 

Exon1 (21 bp)

Exon1 (9 bp)

 

 mHAP1

125 (71.84%)

+

+

 

 mHAP2

33 (18.97%)

–

–

 

 mHAP3

15 (8.62%)

–

+

 

 mHAP4

1 (0.57%)

+

–

 
  1. athe location and length of INDEL
  2. bMarker-based haplotype. For each paralogue, haplotype in winter oilseed rape cv. Tapidor was inferred as mHAP1
  3. c+, insertion; −, deletion
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BMC Plant Biology

ISSN: 1471-2229

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