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Table 1 Identification and classification of HRGPs in pear genome

From: The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

Family

Subfamily

Searching Strategies

HRGPs with SP

HRGPs with GPI

Total

EXT

SP3

> = 2 SPPP

19

3

56

SP4

> = 2 SPPPP

16

2

33

SP5

> = 2 SPPPPP

16

0

26

AGP

EXT-AGPs

> 10%PAST& SP motif

33

4

54

AG-peptides

> 10% PAST & AA < 90

15

5

126

lysine-AGPs

> 10%PAST& Lysine rich Domain

33

10

183

FLAs

> 10%PAST&Fasciclin Domain

5

3

7

Classical AGPs

>  30% PAST

44

24

152

PRP

PRP

PPV.[KC]

17

0

201

  1. Note: SP refers to signal peptide; GPI refers to glycosylphosphatidylinositol