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Table 2 The differentially expressed genes involved in sucrose degradation and starch synthesis pathways

From: Transcriptome analysis reveals potential mechanisms for different grain size between natural and resynthesized allohexaploid wheats with near-identical AABB genomes

Functional category Gene IDa Description Log2 fold changeb FDR-adjusted P-value
Major CHO metabolism. Degradation. sucrose. Invertases TRIAE_CS42_4AL_TGACv1_288169_AA0939320 Vacuolar invertase 1.42 7.74E-06
TRIAE_CS42_4AL_TGACv1_288169_AA0939350 Vacuolar invertase 2.27 5.23E-04
TRIAE_CS42_4DL_TGACv1_342608_AA1117890 Cell wall invertase 1.56 2.30E-02
TRIAE_CS42_5BL_TGACv1_404129_AA1285640 Cell wall invertase 6.21 4.38E-21
TRIAE_CS42_5DL_TGACv1_433511_AA1415210 Cell wall invertase 2.29 8.19E-06
TRIAE_CS42_6AS_TGACv1_487805_AA1573040 Cell wall invertase 1.81 1.56E-09
TRIAE_CS42_6BS_TGACv1_514515_AA1660840 Cell wall invertase 1.24 2.21E-09
TRIAE_CS42_7AS_TGACv1_569119_AA1807690 Vacuolar invertase 2.38 5.75E-21
TRIAE_CS42_7AS_TGACv1_569629_AA1820610 Vacuolar invertase 1.49 1.16E-02
TRIAE_CS42_7AS_TGACv1_571086_AA1844330 Vacuolar invertase 1.26 3.85E-04
TRIAE_CS42_7DS_TGACv1_622623_AA2042790 Vacuolar invertase 1.42 9.07E-06
TRIAE_CS42_7DS_TGACv1_622976_AA2048120 Vacuolar invertase 3.26 4.97E-28
TRIAE_CS42_U_TGACv1_645154_AA2143350 Cell wall invertase 1.05 1.71E-03
TRIAE_CS42_U_TGACv1_645154_AA2143370 Cell wall invertase 1.03 2.48E-07
TRIAE_CS42_1AL_TGACv1_002147_AA0039110 Cell wall invertase −3.03 1.42E-07
TRIAE_CS42_1BL_TGACv1_030243_AA0083360 Cell wall invertase −3.29 5.86E-07
TRIAE_CS42_1DL_TGACv1_061368_AA0193220 Cell wall invertase −2.93 5.66E-05
TRIAE_CS42_2AL_TGACv1_093126_AA0272730 Cell wall invertase −1.95 1.27E-04
TRIAE_CS42_2BL_TGACv1_130262_AA0407610 Cell wall invertase −3.38 6.12E-09
TRIAE_CS42_2DL_TGACv1_159903_AA0544110 Cell wall invertase −1.14 4.71E-04
TRIAE_CS42_4AL_TGACv1_288169_AA0939300 Vacuolar invertase −4.23 6.36E-07
TRIAE_CS42_6AS_TGACv1_486383_AA1560850 Vacuolar invertase −3.18 4.03E-06
TRIAE_CS42_6BS_TGACv1_513852_AA1650710 Vacuolar invertase −1.89 4.46E-02
TRIAE_CS42_6BS_TGACv1_515140_AA1667640 Vacuolar invertase −3.17 9.25E-05
TRIAE_CS42_6DS_TGACv1_542882_AA1732150 Vacuolar invertase −2.92 3.76E-07
TRIAE_CS42_7AS_TGACv1_570692_AA1839380 Vacuolar invertase −2.64 2.06E-05
TRIAE_CS42_7DS_TGACv1_621614_AA2021150 Vacuolar invertase −1.54 8.16E-03
TRIAE_CS42_7DS_TGACv1_622753_AA2044760 Vacuolar invertase −4.78 1.20E-19
TRIAE_CS42_U_TGACv1_642336_AA2115990 Neutral invertase −1.11 8.73E-03
Major CHO metabolism. Degradation. sucrose. Susy TRIAE_CS42_1AL_TGACv1_002916_AA0046300 Sucrose synthase 4.20 1.42E-09
TRIAE_CS42_2AS_TGACv1_112101_AA0330380 Sucrose synthase 2.25 2.76E-16
TRIAE_CS42_2BS_TGACv1_145971_AA0451230 Sucrose synthase 1.85 1.34E-11
TRIAE_CS42_2DL_TGACv1_159703_AA0541730 Sucrose synthase 1.89 5.80E-05
TRIAE_CS42_2DS_TGACv1_177457_AA0577630 Sucrose synthase 2.71 9.79E-17
TRIAE_CS42_4AL_TGACv1_288793_AA0958320 Sucrose synthase 1.30 1.73E-05
TRIAE_CS42_7AS_TGACv1_569135_AA1808380 Sucrose synthase 2.60 1.96E-16
  TRIAE_CS42_7DS_TGACv1_622658_AA2043420 Sucrose synthase 2.94 1.09E-24
TRIAE_CS42_6DL_TGACv1_527850_AA1709240 Sucrose synthase −1.74 3.14E-07
TRIAE_CS42_7DL_TGACv1_604951_AA2003310 Sucrose synthase −1.96 3.18E-09
Major CHO metabolism. Synthesis. starch. AGPase TRIAE_CS42_1AL_TGACv1_000939_AA0022300 AGPase plastidial large subunit 9.51 9.06E-110
TRIAE_CS42_1BL_TGACv1_031712_AA0119450 AGPase plastidial large subunit 1.26 9.23E-05
TRIAE_CS42_7AS_TGACv1_569682_AA1821750 AGPase plastidial large subunit 1.29 2.65E-06
TRIAE_CS42_7DS_TGACv1_622617_AA2042690 AGPase plastidial large subunit 1.52 6.37E-08
Major CHO metabolism. Synthesis. starch. Debranching TRIAE_CS42_1DL_TGACv1_061778_AA0203340 Isoamylase 2 1.15 3.90E-07
TRIAE_CS42_7DS_TGACv1_622495_AA2040790 Isoamylase 1 1.07 6.13E-04
Major CHO metabolism. Synthesis. starch. Starch branching TRIAE_CS42_2AL_TGACv1_095785_AA0314520 Starch branching enzyme 2 2.85 4.50E-10
TRIAE_CS42_2BL_TGACv1_132845_AA0440100 Starch branching enzyme 2 1.43 3.85E-05
TRIAE_CS42_2DL_TGACv1_158200_AA0512220 Starch branching enzyme 2 1.87 1.96E-09
  TRIAE_CS42_7AL_TGACv1_556597_AA1766610 Starch branching enzyme 2 2.83 1.68E-14
TRIAE_CS42_7AL_TGACv1_556597_AA1766630 Starch branching enzyme 2 2.97 3.57E-14
TRIAE_CS42_7BL_TGACv1_577598_AA1879190 Starch branching enzyme 2 4.12 3.24E-14
TRIAE_CS42_7BL_TGACv1_580343_AA1913520 Starch branching enzyme 2 2.28 6.22E-08
TRIAE_CS42_7DL_TGACv1_603128_AA1976400 Starch branching enzyme 2 2.77 2.09E-05
TRIAE_CS42_7DL_TGACv1_603128_AA1976410 Starch branching enzyme 2 4.79 9.97E-23
TRIAE_CS42_7AL_TGACv1_556924_AA1773500 Starch branching enzyme 1 −1.06 2.63E-02
Major CHO metabolism. Synthesis. starch.starch synthase TRIAE_CS42_1AS_TGACv1_020151_AA0075220 Starch synthase 3 1.77 3.39E-12
TRIAE_CS42_1BL_TGACv1_030553_AA0093880 Starch synthase 1.93 1.18E-10
TRIAE_CS42_1BS_TGACv1_050983_AA0177050 Starch synthase 3 1.07 2.87E-05
TRIAE_CS42_2BL_TGACv1_131141_AA0423210 Starch synthase 3 −1.09 9.71E-04
TRIAE_CS42_2DL_TGACv1_157939_AA0502660 Starch synthase −1.02 1.31E-03
  1. aGenes for qRT-PCR analysis are shown in bold
  2. bFold change indicates that gene expression change in XX329 compared to TAA10