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Table 2 Distribution of small RNAs among different categories in winter turnip rape

From: Identification of cold stress responsive microRNAs in two winter turnip rape (Brassica rapa L.) by high throughput sequencing

Category

Leaf

Root

4LCK

4LTR

7LCK

7LTR

4RCK

4RTR

7RCK

7RTR

Total

13,272,242 (100%)

13,531,951 (100%)

13,259,761 (100%)

13,252,340 (100%)

13,500,310 (100%)

13,729,626 (100%)

13,630,281 (100%)

12,970,069 (100%)

intergenic

10,863,143 (81.85%)

11,390,504 (84.17%)

11,144,905 (84.05%)

11,052,177 (83.40%)

9,907,946 (78.67%)

11,180,659 (81.43%)

10,725,549 (78.69%)

10,509,664 (81.03%)

snRNA

1626 (0.01%)

966 (0.01%)

1039 (0.01%)

1034 (0.01%)

2271 (0.02%)

1819 (0.01%)

1844 (0.01%)

2490 (0.02%)

rRNA

399,431 (3.01%)

336,734 (2.49%)

210,748 (1.59%)

349,445 (2.64%)

135,673 (0.77%)

109,499 (0.80%)

260,830 (1.91%)

175,824 (1.36%)

snoRNA

7396 (0.06%)

9558 (0.07%)

8350 (0.06%)

10,854 (0.08%)

7972 (0.05%)

8510 (0.06%)

8079 (0.06%)

16,507 (0.13%)

precursor

21,608 (0.16%)

10,156 (0.08%)

11,141 (0.08%)

13,346 (0.10%)

6579 (0.05%)

6436 (0.05%)

8380 (0.06%)

5120 (0.04%)

miRNA

317,989 (2.40%)

234,958 (1.74%)

241,114 (1.82%)

236,628 (1.79%)

339,170 (2.70%)

345,643 (2.52%)

218,823 (1.61%)

244,386 (1.88%)

tRNA

1219 (0.01%)

923 (0.01%)

543 (0.00%)

1496 (0.01%)

359 (0.00%)

125 (0.00%)

641 (0.00%)

230 (0.00%)

unmap

1,657,480 (12.49%)

1,546,089 (11.43%)

1,639,573 (12.37%)

1,584,846 (11.96%)

3,097,914 (17.73%)

2,075,386 (15.12%)

2,403,423 (17.63%)

2,014,395 (15.53%)