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Table 1 Mapping summary of RNA-seq samples

From: Ubiquitin-related genes are differentially expressed in isogenic lines contrasting for pericarp cell size and grain weight in hexaploid wheat

    

CSS gene models

TGAC gene models

Genotype

Time point

Replicate

Reads

Reads pseudoaligned

% reads pseudoaligned

Reads pseudoaligned

% reads pseudoaligned

5A -

1

1

24,443,658

17,072,939

69.85

20,549,681

84.07

5A -

1

2

34,441,799

23,349,288

67.79

28,483,090

82.70

5A -

1

3

23,462,705

16,220,597

69.13

19,664,859

83.81

5A -

2

1

21,333,672

14,839,724

69.56

18,052,324

84.62

5A -

2

2

14,967,302

10,632,519

71.04

12,803,552

85.54

5A -

2

3

35,522,754

25,491,523

71.76

30,297,336

85.29

5A +

1

1

19,267,564

13,520,181

70.17

16,317,352

84.69

5A +

1

2

22,299,102

15,479,234

69.42

18,780,525

84.22

5A +

1

3

30,531,539

20,789,582

68.09

25,436,453

83.31

5A +

2

1

51,637,607

36,192,489

70.09

43,739,451

84.70

5A +

2

2

53,575,232

37,956,887

70.85

45,497,914

84.92

5A +

2

3

30,553,421

21,604,895

70.71

25,984,674

85.05

  

Total

362,036,355

253,149,858

–

305,607,211

–

  

Mean

30,169,696

21,095,822

69.87

25,467,268

84.41