TY - STD TI - United Nations. World Population Prospects: the 2015 revision. https://esa.un.org/unpd/wpp/publications/files/key_findings_wpp_2015.pdf. Accessed 27 Feb 2017. UR - https://esa.un.org/unpd/wpp/publications/files/key_findings_wpp_2015.pdf ID - ref1 ER - TY - STD TI - FAO, IFAD, WFP. The State of Food Insecurity in the World 2015. Meeting the 2015 international hunger targets: taking stock of uneven progress. Rome, FAO 2015. ID - ref2 ER - TY - BOOK AU - Rosegrant, M. W. AU - Tokgoz, S. AU - Bhandary, P. AU - Msangi, S. PY - 2013 DA - 2013// TI - Looking ahead: Scenarios for the future of food. 2012 Global Food Policy Report PB - International Food Policy Research Institute CY - Washington, D.C ID - Rosegrant2013 ER - TY - JOUR AU - Tilman, D. AU - Balzer, C. AU - Hill, J. AU - Befort, B. L. PY - 2011 DA - 2011// TI - Global food demand and the sustainable intensification of agriculture JO - Proc Natl Acad Sci VL - 108 UR - https://doi.org/10.1073/pnas.1116437108 DO - 10.1073/pnas.1116437108 ID - Tilman2011 ER - TY - BOOK PY - 2009 DA - 2009// TI - Global agriculture towards 2050 PB - FAO CY - Rome ID - ref5 ER - TY - JOUR AU - Ray, D. K. AU - Mueller, N. D. AU - West, P. C. AU - Foley, J. A. PY - 2013 DA - 2013// TI - Yield Trends Are Insufficient to Double Global Crop Production by 2050 JO - PloS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0066428 DO - 10.1371/journal.pone.0066428 ID - Ray2013 ER - TY - JOUR AU - Kuchel, H. AU - Williams, K. J. AU - Langridge, P. AU - Eagles, H. A. AU - Jefferies, S. P. PY - 2007 DA - 2007// TI - Genetic dissection of grain yield in bread wheat. I. QTL analysis JO - Theor Appl Genet VL - 115 UR - https://doi.org/10.1007/s00122-007-0629-7 DO - 10.1007/s00122-007-0629-7 ID - Kuchel2007 ER - TY - JOUR AU - Li, N. AU - Li, Y. PY - 2015 DA - 2015// TI - Maternal control of seed size in plants JO - J Exp Bot VL - 66 UR - https://doi.org/10.1093/jxb/eru549 DO - 10.1093/jxb/eru549 ID - Li2015 ER - TY - JOUR AU - Huang, R. AU - Jiang, L. AU - Zheng, J. AU - Wang, T. AU - Wang, H. AU - Huang, Y. PY - 2013 DA - 2013// TI - Genetic bases of rice grain shape: so many genes, so little known JO - Trends in Plant Science VL - 18 UR - https://doi.org/10.1016/j.tplants.2012.11.001 DO - 10.1016/j.tplants.2012.11.001 ID - Huang2013 ER - TY - JOUR AU - Wang, S. AU - Wu, K. AU - Yuan, Q. AU - Liu, X. AU - Liu, Z. AU - Lin, X. PY - 2012 DA - 2012// TI - Control of grain size, shape and quality by OsSPL16 in rice JO - Nature Genetics VL - 44 UR - https://doi.org/10.1038/ng.2327 DO - 10.1038/ng.2327 ID - Wang2012 ER - TY - JOUR AU - Garcia, D. AU - Gerald, J. N. F. AU - Berger, F. PY - 2005 DA - 2005// TI - Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis JO - Plant Cell VL - 17 UR - https://doi.org/10.1105/tpc.104.027136 DO - 10.1105/tpc.104.027136 ID - Garcia2005 ER - TY - JOUR AU - Song, X. -. J. AU - Huang, W. AU - Shi, M. AU - Zhu, M. -. Z. AU - Lin, H. -. X. PY - 2007 DA - 2007// TI - A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng2014 DO - 10.1038/ng2014 ID - Song2007 ER - TY - JOUR AU - Simmonds, J. AU - Scott, P. AU - Brinton, J. AU - Mestre, T. C. AU - Bush, M. AU - Blanco, A. PY - 2016 DA - 2016// TI - A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains JO - Theor Appl Genet VL - 129 UR - https://doi.org/10.1007/s00122-016-2686-2 DO - 10.1007/s00122-016-2686-2 ID - Simmonds2016 ER - TY - JOUR AU - Xia, T. AU - Li, N. AU - Dumenil, J. AU - Li, J. AU - Kamenski, A. AU - Bevan, M. W. PY - 2013 DA - 2013// TI - The ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organ size in Arabidopsis JO - Plant Cell VL - 25 UR - https://doi.org/10.1105/tpc.113.115063 DO - 10.1105/tpc.113.115063 ID - Xia2013 ER - TY - JOUR AU - Kitagawa, K. AU - Kurinami, S. AU - Oki, K. AU - Abe, Y. AU - Ando, T. AU - Kono, I. PY - 2010 DA - 2010// TI - A novel kinesin 13 protein regulating Rice seed length JO - Plant Cell Physiol VL - 51 UR - https://doi.org/10.1093/pcp/pcq092 DO - 10.1093/pcp/pcq092 ID - Kitagawa2010 ER - TY - JOUR AU - Fujikura, U. AU - Elsaesser, L. AU - Breuninger, H. AU - Sánchez-Rodríguez, C. AU - Ivakov, A. AU - Laux, T. PY - 2014 DA - 2014// TI - Atkinesin-13A modulates Cell-Wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway JO - PLoS Genet VL - 10 UR - https://doi.org/10.1371/journal.pgen.1004627 DO - 10.1371/journal.pgen.1004627 ID - Fujikura2014 ER - TY - JOUR AU - Fan, C. AU - Xing, Y. AU - Mao, H. AU - Lu, T. AU - Han, B. AU - Xu, C. PY - 2006 DA - 2006// TI - GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein JO - Theor Appl Genet VL - 112 UR - https://doi.org/10.1007/s00122-006-0218-1 DO - 10.1007/s00122-006-0218-1 ID - Fan2006 ER - TY - JOUR AU - Huang, X. AU - Qian, Q. AU - Liu, Z. AU - Sun, H. AU - He, S. AU - Luo, D. PY - 2009 DA - 2009// TI - Natural variation at the DEP1 locus enhances grain yield in rice JO - Nat Genet VL - 41 UR - https://doi.org/10.1038/ng.352 DO - 10.1038/ng.352 ID - Huang2009 ER - TY - JOUR AU - Riefler, M. AU - Novak, O. AU - Strnad, M. AU - Schmülling, T. PY - 2006 DA - 2006// TI - Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.037796 DO - 10.1105/tpc.105.037796 ID - Riefler2006 ER - TY - JOUR AU - Schruff, M. C. AU - Spielman, M. AU - Tiwari, S. AU - Adams, S. AU - Fenby, N. AU - Scott, R. J. PY - 2006 DA - 2006// TI - The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs JO - Development VL - 133 UR - https://doi.org/10.1242/dev.02194 DO - 10.1242/dev.02194 ID - Schruff2006 ER - TY - JOUR AU - Jiang, W. -. B. AU - Huang, H. -. Y. AU - Hu, Y. -. W. AU - Zhu, S. -. W. AU - Wang, Z. -. Y. AU - Lin, W. -. H. PY - 2013 DA - 2013// TI - Brassinosteroid regulates seed size and shape in Arabidopsis JO - Plant Physiol VL - 162 UR - https://doi.org/10.1104/pp.113.217703 DO - 10.1104/pp.113.217703 ID - Jiang2013 ER - TY - STD TI - FAO. Online statistical database: Food balance. FAOSTAT. 2017. http://www.fao.org/faostat/en/. Accessed 27 February 2017. UR - http://www.fao.org/faostat/en ID - ref22 ER - TY - JOUR AU - Ma, M. AU - Zhao, H. AU - Li, Z. AU - Hu, S. AU - Song, W. AU - Liu, X. PY - 2016 DA - 2016// TI - TaCYP78A5 regulates seed size in wheat (Triticum aestivum) JO - J Exp Bot VL - 67 UR - https://doi.org/10.1093/jxb/erv542 DO - 10.1093/jxb/erv542 ID - Ma2016 ER - TY - JOUR AU - Simmonds, J. AU - Scott, P. AU - Leverington-Waite, M. AU - Turner, A. S. AU - Brinton, J. AU - Korzun, V. PY - 2014 DA - 2014// TI - Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.) JO - BMC Plant Biology VL - 14 UR - https://doi.org/10.1186/s12870-014-0191-9 DO - 10.1186/s12870-014-0191-9 ID - Simmonds2014 ER - TY - JOUR AU - Breseghello, F. AU - Sorrells, M. E. PY - 2007 DA - 2007// TI - QTL analysis of kernel size and shape in two hexaploid wheat mapping populations JO - Field Crop Res VL - 101 UR - https://doi.org/10.1016/j.fcr.2006.11.008 DO - 10.1016/j.fcr.2006.11.008 ID - Breseghello2007 ER - TY - JOUR AU - Gegas, V. C. AU - Nazari, A. AU - Griffiths, S. AU - Simmonds, J. AU - Fish, L. AU - Orford, S. PY - 2010 DA - 2010// TI - A genetic framework for grain size and shape variation in wheat JO - Plant Cell VL - 22 UR - https://doi.org/10.1105/tpc.110.074153 DO - 10.1105/tpc.110.074153 ID - Gegas2010 ER - TY - STD TI - Farré A, Sayers L, Leverington-Waite M, Goram R, Orford S, Wingen L, et al. Application of a library of near isogenic lines to understand context dependent expression of QTL for grain yield and adaptive traits in bread wheat. BMC Plant Biol. 2016;16 https://doi.org/10.1186/s12870-016-0849-6. ID - ref27 ER - TY - STD TI - Kumar A, Mantovani EE, Seetan R, Soltani A, Echeverry-Solarte M, Jain S, et al. Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite x Nonadapted Cross using a High Density SNP Linkage Map. Plant Genome-Us. 2016;9(1) https://doi.org/10.3835/plantgenome2015.09.0081. ID - ref28 ER - TY - JOUR AU - Brinton, J. AU - Simmonds, J. AU - Minter, F. AU - Leverington-Waite, M. AU - Snape, J. AU - Uauy, C. PY - 2017 DA - 2017// TI - Increased pericarp cell length underlies a major quantitative trait locus for grain weight in hexaploid wheat JO - New Phytol VL - 215 UR - https://doi.org/10.1111/nph.14624 DO - 10.1111/nph.14624 ID - Brinton2017 ER - TY - JOUR AU - Hasan, A. K. AU - Herrera, J. AU - Lizana, C. AU - Calderini, D. F. PY - 2011 DA - 2011// TI - Carpel weight, grain length and stabilized grain water content are physiological drivers of grain weight determination of wheat JO - Field Crop Res VL - 123 UR - https://doi.org/10.1016/j.fcr.2011.05.019 DO - 10.1016/j.fcr.2011.05.019 ID - Hasan2011 ER - TY - STD TI - Guo Z, Chen D, Schnurbusch T. Variance components, heritability and correlation analysis of anther and ovary size during the floral development of bread wheat. J Exp Bot. 2015; https://doi.org/10.1093/jxb/erv117. ID - ref31 ER - TY - JOUR AU - Shewry, P. R. AU - RAC, M. AU - Tosi, P. AU - Wan, Y. AU - Underwood, C. AU - Lovegrove, A. PY - 2012 DA - 2012// TI - An integrated study of grain development of wheat (cv. Hereward) JO - J Cereal Sci VL - 56 UR - https://doi.org/10.1016/j.jcs.2011.11.007 DO - 10.1016/j.jcs.2011.11.007 ID - Shewry2012 ER - TY - STD TI - Wan Y, Poole RL, Huttly AK, Toscano-Underwood C, Feeney K, Welham S, et al. Transcriptome analysis of grain development in hexaploid wheat. BMC Genomics. 2008;9 https://doi.org/10.1186/1471-2164-9-121. ID - ref33 ER - TY - JOUR AU - Pfeifer, M. AU - Kugler, K. G. AU - Sandve, S. R. AU - Zhan, B. AU - Rudi, H. AU - Hvidsten, T. R. PY - 2014 DA - 2014// TI - Genome interplay in the grain transcriptome of hexaploid bread wheat JO - Science VL - 345 UR - https://doi.org/10.1126/science.1250091 DO - 10.1126/science.1250091 ID - Pfeifer2014 ER - TY - JOUR AU - Pellny, T. K. AU - Lovegrove, A. AU - Freeman, J. AU - Tosi, P. AU - Love, C. G. AU - Knox, J. P. PY - 2012 DA - 2012// TI - Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome JO - Plant Physiol VL - 158 UR - https://doi.org/10.1104/pp.111.189191 DO - 10.1104/pp.111.189191 ID - Pellny2012 ER - TY - JOUR AU - Yu, Y. AU - Zhu, D. AU - Ma, C. AU - Cao, H. AU - Wang, Y. AU - Xu, Y. PY - 2016 DA - 2016// TI - Transcriptome analysis reveals key differentially expressed genes involved in wheat grain development JO - The Crop Journal VL - 4 UR - https://doi.org/10.1016/j.cj.2016.01.006 DO - 10.1016/j.cj.2016.01.006 ID - Yu2016 ER - TY - JOUR AU - Laudencia-Chingcuanco, D. L. AU - Stamova, B. S. AU - You, F. M. AU - Lazo, G. R. AU - Beckles, D. M. AU - Anderson, O. D. PY - 2007 DA - 2007// TI - Transcriptional profiling of wheat caryopsis development using cDNA microarrays JO - Plant Mol Biol VL - 63 UR - https://doi.org/10.1007/s11103-006-9114-y DO - 10.1007/s11103-006-9114-y ID - Laudencia-Chingcuanco2007 ER - TY - JOUR AU - Liu, W. AU - Wu, Z. AU - Zhang, Y. AU - Guo, D. AU - Xu, Y. AU - Chen, W. PY - 2014 DA - 2014// TI - Transcriptome analysis of wheat grain using RNA-Seq JO - Frontiers of Agricultural Science and Enginnering VL - 1 UR - https://doi.org/10.15302/J-FASE-2014024 DO - 10.15302/J-FASE-2014024 ID - Liu2014 ER - TY - STD TI - IWGSC RefSeq v1.0. https://wheat-urgi.versailles.inra.fr/Seq-Repository/Assemblies. UR - https://wheat-urgi.versailles.inra.fr/Seq-Repository/Assemblies ID - ref39 ER - TY - STD TI - IWGSC. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science. 2014;345(6194):1251788. https://doi.org/10.1126/science.1251788. ID - ref40 ER - TY - JOUR AU - Clavijo, B. J. AU - Venturini, L. AU - Schudoma, C. AU - Garcia Accinelli, G. AU - Kaithakottil, G. AU - Wright, J. PY - 2017 DA - 2017// TI - An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations JO - Genome Res VL - 27 UR - https://doi.org/10.1101/gr.217117.116 DO - 10.1101/gr.217117.116 ID - Clavijo2017 ER - TY - STD TI - Zimin AV, Puiu D, Hall R, Kingan S, Clavijo BJ, Salzberg SL. The first near-complete assembly of the hexaploid bread wheat genome. Triticum aestivum bioRxiv. 2017; https://doi.org/10.1101/159111. ID - ref42 ER - TY - JOUR AU - Cantu, D. AU - Pearce, S. P. AU - Distelfeld, A. AU - Christiansen, M. W. AU - Uauy, C. AU - Akhunov, E. PY - 2011 DA - 2011// TI - Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-492 DO - 10.1186/1471-2164-12-492 ID - Cantu2011 ER - TY - JOUR AU - Barrero, J. M. AU - Cavanagh, C. AU - Verbyla, K. L. AU - Tibbits, J. F. G. AU - Verbyla, A. P. AU - Huang, B. E. PY - 2015 DA - 2015// TI - Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL JO - Genome Biol VL - 16 UR - https://doi.org/10.1186/s13059-015-0665-6 DO - 10.1186/s13059-015-0665-6 ID - Barrero2015 ER - TY - JOUR AU - Pimentel, H. AU - Bray, N. L. AU - Puente, S. AU - Melsted, P. AU - Pachter, L. PY - 2017 DA - 2017// TI - Differential analysis of RNA-seq incorporating quantification uncertainty JO - Nat Methods VL - 14 UR - https://doi.org/10.1038/nmeth.4324 DO - 10.1038/nmeth.4324 ID - Pimentel2017 ER - TY - JOUR AU - Borrill, P. AU - Harrington, S. A. AU - Uauy, C. PY - 2017 DA - 2017// TI - Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat JO - G3: Genes|Genomes|Genetics VL - 7 UR - https://doi.org/10.1534/g3.117.043679 DO - 10.1534/g3.117.043679 ID - Borrill2017 ER - TY - JOUR AU - Guttman, M. AU - Rinn, J. L. PY - 2012 DA - 2012// TI - Modular regulatory principles of large non-coding RNAs JO - Nature VL - 482 UR - https://doi.org/10.1038/nature10887 DO - 10.1038/nature10887 ID - Guttman2012 ER - TY - JOUR AU - Sun, F. AU - Guo, G. AU - Du, J. AU - Guo, W. AU - Peng, H. AU - Ni, Z. PY - 2014 DA - 2014// TI - Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.) JO - BMC Plant Biology VL - 14 UR - https://doi.org/10.1186/1471-2229-14-142 DO - 10.1186/1471-2229-14-142 ID - Sun2014 ER - TY - JOUR AU - Disch, S. AU - Anastasiou, E. AU - Sharma, V. K. AU - Laux, T. AU - Fletcher, J. C. AU - Lenhard, M. PY - 2006 DA - 2006// TI - The E3 ubiquitin ligase BIG BROTHER controls Arabidopsis organ size in a dosage-dependent manner JO - Curr Biol VL - 16 UR - https://doi.org/10.1016/j.cub.2005.12.026 DO - 10.1016/j.cub.2005.12.026 ID - Disch2006 ER - TY - JOUR AU - Dong, H. AU - Dumenil, J. AU - Lu, F. H. AU - Na, L. AU - Vanhaeren, H. AU - Naumann, C. PY - 2017 DA - 2017// TI - Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis JO - Genes Dev VL - 31 UR - https://doi.org/10.1101/gad.292235.116 DO - 10.1101/gad.292235.116 ID - Dong2017 ER - TY - JOUR AU - Du, L. AU - Li, N. AU - Chen, L. AU - Xu, Y. AU - Li, Y. AU - Zhang, Y. PY - 2014 DA - 2014// TI - The ubiquitin receptor DA1 regulates seed and organ size by modulating the stability of the ubiquitin-specific protease UBP15/SOD2 in Arabidopsis JO - Plant Cell VL - 26 UR - https://doi.org/10.1105/tpc.114.122663 DO - 10.1105/tpc.114.122663 ID - Du2014 ER - TY - JOUR AU - Huang, K. AU - Wang, D. AU - Duan, P. AU - Zhang, B. AU - Xu, R. AU - Li, N. PY - 2017 DA - 2017// TI - WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice JO - Plant J VL - 91 UR - https://doi.org/10.1111/tpj.13613 DO - 10.1111/tpj.13613 ID - Huang2017 ER - TY - JOUR AU - Cheng, Y. AU - Qin, G. AU - Dai, X. AU - Zhao, Y. PY - 2007 DA - 2007// TI - NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis JO - Proc Natl Acad Sci VL - 104 UR - https://doi.org/10.1073/pnas.0708506104 DO - 10.1073/pnas.0708506104 ID - Cheng2007 ER - TY - JOUR AU - Radchuk, V. AU - Weier, D. AU - Radchuk, R. AU - Weschke, W. AU - Weber, H. PY - 2011 DA - 2011// TI - Development of maternal seed tissue in barley is mediated by regulated cell expansion and cell disintegration and coordinated with endosperm growth JO - J Exp Bot VL - 62 UR - https://doi.org/10.1093/jxb/erq348 DO - 10.1093/jxb/erq348 ID - Radchuk2011 ER - TY - JOUR AU - Drea, S. AU - Leader, D. J. AU - Arnold, B. C. AU - Shaw, P. AU - Dolan, L. AU - Doonan, J. H. PY - 2005 DA - 2005// TI - Systematic spatial analysis of gene expression during wheat caryopsis development JO - Plant Cell VL - 17 UR - https://doi.org/10.1105/tpc.105.034058 DO - 10.1105/tpc.105.034058 ID - Drea2005 ER - TY - JOUR AU - Dominguez, F. AU - Cejudo, F. J. PY - 1996 DA - 1996// TI - Characterization of the Endoproteases appearing during wheat grain development JO - Plant Physiol VL - 112 UR - https://doi.org/10.1104/pp.112.3.1211 DO - 10.1104/pp.112.3.1211 ID - Dominguez1996 ER - TY - JOUR AU - Kaspar-Schoenefeld, S. AU - Merx, K. AU - Jozefowicz, A. M. AU - Hartmann, A. AU - Seiffert, U. AU - Weschke, W. PY - 2016 DA - 2016// TI - Label-free proteome profiling reveals developmental-dependent patterns in young barley grains JO - Journal of Proteomics VL - 143 UR - https://doi.org/10.1016/j.jprot.2016.04.007 DO - 10.1016/j.jprot.2016.04.007 ID - Kaspar-Schoenefeld2016 ER - TY - JOUR AU - Pires, J. C. AU - Conant, G. C. PY - 2016 DA - 2016// TI - Robust yet fragile: expression noise, protein Misfolding, and gene dosage in the evolution of genomes JO - Annu Rev Genet VL - 50 UR - https://doi.org/10.1146/annurev-genet-120215-035400 DO - 10.1146/annurev-genet-120215-035400 ID - Pires2016 ER - TY - JOUR AU - Yang, M. AU - Gao, X. AU - Dong, J. AU - Gandhi, N. AU - Cai, H. AU - von Wettstein, D. H. PY - 2017 DA - 2017// TI - Pattern of protein expression in developing wheat grains identified through proteomic analysis JO - Front Plant Sci VL - 8 UR - https://doi.org/10.3389/fpls.2017.00962 DO - 10.3389/fpls.2017.00962 ID - Yang2017 ER - TY - JOUR AU - Li, J. AU - Jiang, J. AU - Qian, Q. AU - Xu, Y. AU - Zhang, C. AU - Xiao, J. PY - 2011 DA - 2011// TI - Mutation of Rice BC12/GDD1, which encodes a kinesin-like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation JO - Plant Cell VL - 23 UR - https://doi.org/10.1105/tpc.110.081901 DO - 10.1105/tpc.110.081901 ID - Li2011 ER - TY - JOUR AU - Torada, A. AU - Koike, M. AU - Ogawa, T. AU - Takenouchi, Y. AU - Tadamura, K. AU - Wu, J. PY - 2016 DA - 2016// TI - A Causal Gene for Seed Dormancy on Wheat Chromosome 4A Encodes a MAP Kinase Kinase JO - Curr Biol VL - 26 UR - https://doi.org/10.1016/j.cub.2016.01.063 DO - 10.1016/j.cub.2016.01.063 ID - Torada2016 ER - TY - JOUR AU - Shorinola, O. AU - Balcárková, B. AU - Hyles, J. AU - JFG, T. AU - Hayden, M. J. AU - Holušova, K. PY - 2017 DA - 2017// TI - Haplotype Analysis of the Pre-harvest Sprouting Resistance Locus Phs-A1 Reveals a Causal Role of TaMKK3-A in Global Germplasm JO - Front Plant Sci VL - 8 UR - https://doi.org/10.3389/fpls.2017.01555 DO - 10.3389/fpls.2017.01555 ID - Shorinola2017 ER - TY - JOUR AU - Ramirez-Gonzalez, R. H. AU - Segovia, V. AU - Bird, N. AU - Fenwick, P. AU - Holdgate, S. AU - Berry, S. PY - 2015 DA - 2015// TI - RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat JO - Plant Biotechnol J VL - 13 UR - https://doi.org/10.1111/pbi.12281 DO - 10.1111/pbi.12281 ID - Ramirez-Gonzalez2015 ER - TY - STD TI - Uauy C, Wulff BBH, Dubcovsky J. Combining Traditional Mutagenesis with New High-Throughput Sequencing and Genome Editing to Reveal Hidden Variation in Polyploid Wheat. Annual Review of Genetics. 2017;51(1) https://doi.org/10.1146/annurev-genet-120116-024533. ID - ref64 ER - TY - JOUR AU - Bevan, M. W. AU - Uauy, C. AU - Wulff, B. B. H. AU - Zhou, J. AU - Krasileva, K. AU - Clark, M. D. PY - 2017 DA - 2017// TI - Genomic innovation for crop improvement JO - Nature VL - 543 UR - https://doi.org/10.1038/nature22011 DO - 10.1038/nature22011 ID - Bevan2017 ER - TY - JOUR AU - Bray, N. L. AU - Pimentel, H. AU - Melsted, P. AU - Pachter, L. PY - 2016 DA - 2016// TI - Near-optimal probabilistic RNA-seq quantification JO - Nat Biotech VL - 34 UR - https://doi.org/10.1038/nbt.3519 DO - 10.1038/nbt.3519 ID - Bray2016 ER - TY - STD TI - Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Meth. 2017;14(4):417–9. https://doi.org/10.1038/nmeth.4197. UR - https://doi.org/10.1038/nmeth.4197 ID - ref67 ER - TY - JOUR AU - Kaplan-Levy, R. N. AU - Brewer, P. B. AU - Quon, T. AU - Smyth, D. R. PY - 2012 DA - 2012// TI - The trihelix family of transcription factors – light, stress and development JO - Trends in Plant Science VL - 17 UR - https://doi.org/10.1016/j.tplants.2011.12.002 DO - 10.1016/j.tplants.2011.12.002 ID - Kaplan-Levy2012 ER - TY - JOUR AU - Barg, R. AU - Sobolev, I. AU - Eilon, T. AU - Gur, A. AU - Chmelnitsky, I. AU - Shabtai, S. PY - 2005 DA - 2005// TI - The tomato early fruit specific gene Lefsm1 defines a novel class of plant-specific SANT/MYB domain proteins JO - Planta VL - 221 UR - https://doi.org/10.1007/s00425-004-1433-0 DO - 10.1007/s00425-004-1433-0 ID - Barg2005 ER - TY - JOUR AU - Sarojam, R. AU - Sappl, P. G. AU - Goldshmidt, A. AU - Efroni, I. AU - Floyd, S. K. AU - Eshed, Y. PY - 2010 DA - 2010// TI - Differentiating Arabidopsis shoots from leaves by combined YABBY activities JO - Plant Cell VL - 22 UR - https://doi.org/10.1105/tpc.110.075853 DO - 10.1105/tpc.110.075853 ID - Sarojam2010 ER - TY - STD TI - Cong B, Barrero LS, Tanksley SD. Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet. 2008;40(6):800–4. https://doi.org/10.1038/ng.144. UR - https://doi.org/10.1038/ng.144 ID - ref71 ER - TY - JOUR AU - Dinneny, J. R. AU - Weigel, D. AU - Yanofsky, M. F. PY - 2006 DA - 2006// TI - NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis JO - Development VL - 133 UR - https://doi.org/10.1242/dev.02335 DO - 10.1242/dev.02335 ID - Dinneny2006 ER - TY - JOUR AU - Jin, Y. AU - Luo, Q. AU - Tong, H. AU - Wang, A. AU - Cheng, Z. AU - Tang, J. PY - 2011 DA - 2011// TI - An AT-hook gene is required for palea formation and floral organ number control in rice JO - Dev Biol VL - 359 UR - https://doi.org/10.1016/j.ydbio.2011.08.023 DO - 10.1016/j.ydbio.2011.08.023 ID - Jin2011 ER - TY - JOUR AU - Gallavotti, A. AU - Malcomber, S. AU - Gaines, C. AU - Stanfield, S. AU - Whipple, C. AU - Kellogg, E. PY - 2011 DA - 2011// TI - BARREN STALK FASTIGIATE1 is an AT-hook protein required for the formation of maize ears JO - Plant Cell VL - 23 UR - https://doi.org/10.1105/tpc.111.084590 DO - 10.1105/tpc.111.084590 ID - Gallavotti2011 ER - TY - JOUR AU - Street, I. H. AU - Shah, P. K. AU - Smith, A. M. AU - Avery, N. AU - Neff, M. M. PY - 2008 DA - 2008// TI - The AT-hook-containing proteins SOB3/AHL29 and ESC/AHL27 are negative modulators of hypocotyl growth in Arabidopsis JO - Plant J VL - 54 UR - https://doi.org/10.1111/j.1365-313X.2007.03393.x DO - 10.1111/j.1365-313X.2007.03393.x ID - Street2008 ER - TY - JOUR AU - Cosgrove, D. J. PY - 2005 DA - 2005// TI - Growth of the plant cell wall JO - Nat Rev Mol Cell Bio VL - 6 UR - https://doi.org/10.1038/nrm1746 DO - 10.1038/nrm1746 ID - Cosgrove2005 ER - TY - JOUR AU - Dante, R. A. AU - Larkins, B. A. AU - Sabelli, P. A. PY - 2014 DA - 2014// TI - Cell cycle control and seed development JO - Front Plant Sci VL - 5 UR - https://doi.org/10.3389/fpls.2014.00493 DO - 10.3389/fpls.2014.00493 ID - Dante2014 ER - TY - JOUR AU - Lee, B. H. AU - Ko, J. -. H. AU - Lee, S. AU - Lee, Y. AU - Pak, J. -. H. AU - Kim, J. H. PY - 2009 DA - 2009// TI - The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties JO - Plant Physiol VL - 151 UR - https://doi.org/10.1104/pp.109.141838 DO - 10.1104/pp.109.141838 ID - Lee2009 ER - TY - JOUR AU - Bao, F. AU - Azhakanandam, S. AU - Franks, R. G. PY - 2010 DA - 2010// TI - SEUSS and SEUSS-LIKE transcriptional adaptors regulate floral and embryonic development in Arabidopsis JO - Plant Physiol VL - 152 UR - https://doi.org/10.1104/pp.109.146183 DO - 10.1104/pp.109.146183 ID - Bao2010 ER - TY - JOUR AU - Adamski, N. M. AU - Anastasiou, E. AU - Eriksson, S. AU - O’Neill, C. M. AU - Lenhard, M. PY - 2009 DA - 2009// TI - Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling JO - Proc Natl Acad Sci VL - 106 UR - https://doi.org/10.1073/pnas.0907024106 DO - 10.1073/pnas.0907024106 ID - Adamski2009 ER - TY - JOUR AU - Locascio, A. AU - Roig-Villanova, I. AU - Bernardi, J. AU - Varotto, S. PY - 2014 DA - 2014// TI - Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxin JO - Front Plant Sci VL - 5 UR - https://doi.org/10.3389/fpls.2014.00412 DO - 10.3389/fpls.2014.00412 ID - Locascio2014 ER - TY - JOUR AU - Li, N. AU - Li, Y. PY - 2014 DA - 2014// TI - Ubiquitin-mediated control of seed size in plants JO - Front Plant Sci VL - 5 ID - Li2014 ER - TY - JOUR AU - Yang, Z. AU - Bai, Z. AU - Li, X. AU - Wang, P. AU - Wu, Q. AU - Yang, L. PY - 2012 DA - 2012// TI - SNP identification and allelic-specific PCR markers development for TaGW2, a gene linked to wheat kernel weight JO - Theor Appl Genet VL - 125 UR - https://doi.org/10.1007/s00122-012-1895-6 DO - 10.1007/s00122-012-1895-6 ID - Yang2012 ER - TY - JOUR AU - Hershko, A. AU - Ciechanover, A. PY - 1998 DA - 1998// TI - The ubiquitin system JO - Annu Rev Biochem VL - 67 UR - https://doi.org/10.1146/annurev.biochem.67.1.425 DO - 10.1146/annurev.biochem.67.1.425 ID - Hershko1998 ER - TY - STD TI - Vanhaeren H, Nam Y-J, De Milde L, Chae E, Storme V, Weigel D, et al. Forever young: the role of ubiquitin receptor DA1 and E3 ligase BIG BROTHER in controlling leaf growth and development. Plant Physiol. 2016;01410 https://doi.org/10.1104/pp.16.01410. ID - ref85 ER - TY - JOUR AU - Kurepa, J. AU - Wang, S. AU - Li, Y. AU - Zaitlin, D. AU - Pierce, A. J. AU - Smalle, J. A. PY - 2009 DA - 2009// TI - Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs JO - Plant Physiol VL - 150 UR - https://doi.org/10.1104/pp.109.135970 DO - 10.1104/pp.109.135970 ID - Kurepa2009 ER - TY - JOUR AU - Weng, J. AU - Gu, S. AU - Wan, X. AU - Gao, H. AU - Guo, T. AU - Su, N. PY - 2008 DA - 2008// TI - Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight JO - Cell Res VL - 18 UR - https://doi.org/10.1038/cr.2008.307 DO - 10.1038/cr.2008.307 ID - Weng2008 ER - TY - JOUR AU - Krasileva, K. V. AU - Vasquez-Gross, H. A. AU - Howell, T. AU - Bailey, P. AU - Paraiso, F. AU - Clissold, L. PY - 2017 DA - 2017// TI - Uncovering hidden variation in polyploid wheat JO - Proc Natl Acad Sci VL - 114 UR - https://doi.org/10.1073/pnas.1619268114 DO - 10.1073/pnas.1619268114 ID - Krasileva2017 ER - TY - STD TI - Andrews S. FastQC: a quality control tool for high throughput sequence data. 2010. http://www.bioinformatics.babraham.ac.uk/projects/fastqc. Accessed 9 Sept 2015. UR - http://www.bioinformatics.babraham.ac.uk/projects/fastqc ID - ref89 ER - TY - JOUR AU - Borrill, P. AU - Ramirez-Gonzalez, R. AU - Uauy, C. PY - 2016 DA - 2016// TI - expVIP: a customizable RNA-seq data analysis and visualization platform JO - Plant Physiol VL - 170 UR - https://doi.org/10.1104/pp.15.01667 DO - 10.1104/pp.15.01667 ID - Borrill2016 ER - TY - JOUR AU - Quinlan, A. R. AU - Hall, I. M. PY - 2010 DA - 2010// TI - BEDTools: a flexible suite of utilities for comparing genomic features JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq033 DO - 10.1093/bioinformatics/btq033 ID - Quinlan2010 ER - TY - JOUR AU - Uauy, C. AU - Distelfeld, A. AU - Fahima, T. AU - Blechl, A. AU - Dubcovsky, J. PY - 2006 DA - 2006// TI - A NAC gene regulating senescence improves grain protein, zinc, and iron content in wheat JO - Science VL - 314 UR - https://doi.org/10.1126/science.1133649 DO - 10.1126/science.1133649 ID - Uauy2006 ER - TY - JOUR AU - Schmittgen, T. D. AU - Livak, K. J. PY - 2008 DA - 2008// TI - Analyzing real-time PCR data by the comparative CT method JO - Nat Protoc VL - 3 UR - https://doi.org/10.1038/nprot.2008.73 DO - 10.1038/nprot.2008.73 ID - Schmittgen2008 ER - TY - JOUR AU - Young, M. D. AU - Wakefield, M. J. AU - Smyth, G. K. AU - Oshlack, A. PY - 2010 DA - 2010// TI - Gene ontology analysis for RNA-seq: accounting for selection bias JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-2-r14 DO - 10.1186/gb-2010-11-2-r14 ID - Young2010 ER - TY - JOUR AU - Grant, C. E. AU - Bailey, T. L. AU - Noble, W. S. PY - 2011 DA - 2011// TI - FIMO: scanning for occurrences of a given motif JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr064 DO - 10.1093/bioinformatics/btr064 ID - Grant2011 ER - TY - JOUR AU - Chow, C. -. N. AU - Zheng, H. -. Q. AU - Wu, N. -. Y. AU - Chien, C. -. H. AU - Huang, H. -. D. AU - Lee, T. -. Y. PY - 2016 DA - 2016// TI - PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1035 DO - 10.1093/nar/gkv1035 ID - Chow2016 ER - TY - JOUR AU - Peng, F. Y. AU - Hu, Z. AU - Yang, R. -. C. PY - 2016 DA - 2016// TI - Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2916-7 DO - 10.1186/s12864-016-2916-7 ID - Peng2016 ER -