Table 2 Putative targets and target mimics of lincRNAs for miRNA
From: Identification of Gossypium hirsutum long non-coding RNAs (lncRNAs) under salt stress
miRNA_Acc. | Target_Acc. | Expectation | UPE | miRNA_aligned_fragment | Target_aligned_fragment | Inhibition |
|---|---|---|---|---|---|---|
ssl-miR395 | lnc_1045 | 3 | 14.736 | GGGAAAUGUUUGGGGAAACU | AGUUUCCCAAAAGAUUUUCU | Cleavage |
stu-miR166d-5p | lnc_174 | 3 | 15.884 | AGAAUGUCGUCUGGUUCGAG | UUUGAACUGGGUGACAUUCU | Cleavage |
bra-miR9555a-5p | lnc_175 | 3 | 13.847 | UUCUAAGCUUUACGGGAAAC | GUUUUUUGUGAGGUUUAGAA | Cleavage |
cpa-miR8142 | lnc_361 | 3 | 15.344 | UGAGGUAAGUAGACAGUAAAGGUU | GAUUUUUGCUGUUGAUUUAUCUCA | Translation |
gra-miR7504d | lnc_361 | 2.5 | 5.165 | AGGAAAAAAAAUCUGAUUUGU | GCAAAUCAGUUUCUUUUUCUU | Translation |
gra-miR8766 | lnc_361 | 3 | 7.582 | UUAUUUUGGAAUUAGAAAAGUCGU | GCAAUUUUUUUAAUUC-AAAAUAA | Cleavage |
cre-miR1173 | lnc_376 | 3 | 14.984 | AUGGUUGCAAUAGAAAUCAU | AUGGUUUGUAUUUUAACCAU | Cleavage |
osa-miR1881 | lnc_464 | 3 | 16.025 | AAUGUUAUUGUAGC-GUGGUGGUG | UGCCACCAUUGCUGCAAUAACAUU | Cleavage |
bra-miR9565-3p | lnc_464 | 3 | 11.927 | CUGAAGCUAGUGAAAGAGAGA | UCUCUCUUUCUCUCGUUUUAG | Translation |
gra-miR7502b | lnc_612 | 3 | 13.131 | UUGUUAAAAGUUUCAUCCAU | AUGGGUGAAAUUUUUGAGAA | Cleavage |
gra-miR7502c | lnc_612 | 3 | 13.131 | UUGUUAAAAGUUUCAUCCAU | AUGGGUGAAAUUUUUGAGAA | Cleavage |
ath-miR417 | lnc_699 | 3 | 10.255 | GAAGGUAGUGAAUUUGUUCG | UGAACAGAUUCAUUGCUUUU | Cleavage |
gma-miR5376 | lnc_699 | 2.5 | 9.125 | UGAAGAUUUGAAGAAUUUGG | CAAAAUUCUUCUAAUUUUCA | Translation |
bdi-miR5200c | lnc_723 | 3 | 13.74 | UGUAGAUACUCUCUAAGGCU | AGUCUUAUAUAGUAUUUACA | Translation |
ath-miR5656 | lnc_801 | 3 | 15.674 | ACUGAAGUAGAGAUUGGGUUU | AAAGACAAUUUCUACUUCGGU | Cleavage |
mtr-miR5747 | lnc_801 | 3 | 11.23 | AAAAGAAUACUCAUACAUAACA | UAUUAAGUAUGAGUAUUUGUUU | Cleavage |
gra-miR7504d | lnc_828 | 2.5 | 14.203 | AGGAAAAAAAAUCUGAUUUGUC | GCCAAAUGAGAUUCUUUUUCUU | Translation |
tae-miR5049-3p | lnc_828 | 3 | 13.657 | AAUAUGGAUCGGAGGGAGUA | UGCUCCCUUCAGUUCAUAUU | Translation |
mtr-miR5285a | lnc_883 | 3 | 15.033 | UGGGACUUUGGGUAGAAUUAGGC | GUUUAAUUCUGCCCUAAGUCUCU | Translation |
mtr-miR5285b | lnc_883 | 3 | 15.033 | UGGGACUUUGGGUAGAAUUAGGC | GUUUAAUUCUGCCCUAAGUCUCU | Translation |
mtr-miR5285c | lnc_883 | 3 | 15.033 | UGGGACUUUGGGUAGAAUUAGGC | GUUUAAUUCUGCCCUAAGUCUCU | Translation |
miRNA_Acc. | Target_Acc. | Expectation | UPE | miRNA_aligned_fragment | Target_aligned_fragment | Inhibition |
bcy-miR529 | lnc_886 | 3 | 15.175 | GAAGAAGAGAGAUGGUAGAG | UUCUCUCAUUUCUUUUCUUC | Cleavage |
ath-miR865-5p | lnc_894 | 3 | 12.672 | AUGAAUUUGGAUCUAAUUGAG | UUCAAUUAGCUCUAAGUUCAA | Cleavage |
gma-miR4393a | lnc_894 | 3 | 6.465 | UGAGAAAAGGACGGCAGAAAAG | CCUUUUUGCUGUCCAUUUCUCU | Cleavage |
gra-miR8693 | lnc_955 | 3 | 9.809 | AGGAUGAAAAUAUUGAUGUAG | UUGUAUUAAUUUUUUCAUCUU | Translation |
gma-miR1520d | lnc_973 | 3 | 13.997 | AUCAGAACAUGACACGUGAC | GUUGCGUGUUAUGUUCUGCU | Cleavage |
bdi-miR399a | lnc_973 | 3 | 13.409 | UGCCAAAGGAGAAUUACCCUG | CAGGUUAGUUUUCCUUUGGCU | Cleavage |
gma-miR1520l | lnc_973 | 3 | 13.635 | AAUCAGAACAUGACACGUGAU | GUUGCGUGUUAUGUUCUGCUU | Cleavage |
gma-miR4994-5p | lnc_973 | 3 | 12.834 | GGUUAGCUCAAGGAUCUCAC | AUGAGUUCCUUGAGCUAAUU | Cleavage |
ghr-156e | lnc_253 | 4.5 | 8.055 | UGACAGAAGAGAGUGAGCAC | GUUCUGCUUCUCUUUUGUUA | Cleavage |