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Table 2 One hundred and seventeen significant association signals (P < 3.06 × 10− 4) involving 76 associated SNP loci and six phenotypic traits

From: Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

Trait SNP Name Chr. Position Alleles Environment P value R 2
PH wsnp_Ra_c16846_25598885 3A 54.99 A/G 09TA 1.00 × 10−4 7.90
  wsnp_Ex_c13802_21639096 3A 56.74 T/C 09YZ 1.02 × 10− 4 5.09
  wsnp_BF292596A_Ta_1_1 3A 119.09 T/C 10YZ 9.68 × 10−5 5.76
  wsnp_JD_c8158_9193784 3B 69.01 T/C 09TA 2.39 × 10−4 8.38
  wsnp_CAP8_c4989_2410261 3B 97.05 T/C 10YL 4.40 × 10− 5 5.00
  wsnp_CAP8_c1419_836050 3B 97.26 A/G 10TA 4.47 × 10−5 6.05
  wsnp_Ex_c33463_41948471 3B 97.72 A/G 10YL 4.45 × 10−5 7.41
  wsnp_Ex_c12048_19288999 5B 71.11 T/C 09TA 1.91 × 10−4 10.00
      09YZ 6.13 × 10−5 11.44
      09YL 8.95 × 10−5 9.89
      10YZ 3.27 × 10−5 3.33
      BLUP 6.31 × 10−6 10.79
  wsnp_Ku_c99567_87349060 5B 163.25 T/C 09YL 1.17 × 10−4 10.79
      09YZ 2.80 × 10−4 9.42
      10YZ 1.33 × 10−4 11.57
  wsnp_Ex_c34597_42879693 6A 180.19 T/C 09YL 2.97 × 10−4 10.39
      09YZ 2.91 × 10−4 10.82
  wsnp_Ra_rep_c69821_67403173 6B 82.68 T/C 10TA 1.81 × 10−4 3.48
  wsnp_Ex_c15458_23737002 7B 65.56 A/G 09TA 9.53 × 10− 5 11.17
      10TA 8.40 × 10−5 10.89
SL wsnp_JD_c6974_8084752 3B 95.50 A/G 09TA 2.17 × 10−4 3.90
  wsnp_CAP8_c4989_2410261 3B 97.05 T/C 10TA 4.85 × 10− 5 3.02
  wsnp_CAP8_c1419_836050 3B 97.26 A/G 10YL 4.85 × 10−5 7.02
      BLUP 4.90 × 10−5 6.01
  wsnp_Ex_c33463_41948471 3B 97.72 A/G 09YZ 4.85 × 10−5 3.02
  wsnp_Ex_c1563_2987002 4A 136.22 A/G 10YL 6.13 × 10− 5 8.13
      BLUP 1.35 × 10−5 9.05
  wsnp_Ex_c28092_37240192 4A 140.47 A/G 10TA 2.03 × 10− 4 2.78
  wsnp_Ex_rep_c67779_66463916 4A 141.36 A/C 09YL 3.00 × 10−4 10.60
      09YZ 2.99 × 10−4 11.61
      10YL 1.37 × 10− 4 9.72
      BLUP 1.73 × 10−4 9.90
  wsnp_Ex_c2266_4247520 4A 141.80 A/G 10YL 2.99 × 10−4 10.61
      BLUP 3.00 × 10−4 8.60
  wsnp_Ex_c12_21212 4A 143.00 T/G 09YZ 3.00 × 10− 4 2.60
  wsnp_Ex_c3463_6348659 4A 144.11 A/G 10TA 2.99 × 10−4 7.61
      10YZ 3.00 × 10− 4 8.46
      10YL 2.29 × 10−4 9.02
  wsnp_Ex_c27298_36506245 5A 102.41 A/G BLUP 1.54 × 10−4 3.89
  wsnp_Ex_c49211_53875575 5A 108.64 T/G 09TA 1.01 × 10−5 7.28
      09YZ 2.67 × 10− 4 8.24
      09YL 3.70 × 10−5 4.89
      10TA 3.79 × 10−5 6.89
      10YZ 1.11 × 10−5 5.08
      10YL 2.66 × 10−4 5.04
  wsnp_Ex_c10127_16635328 5A 108.92 T/C 09TA 2.54 × 10−5 2.34
  wsnp_Ex_c19647_28632894 5A 123.92 A/G 10YZ 2.80 × 10−4 2.64
  wsnp_Ex_c1630_3105100 5B 161.77 A/G 10YL 1.28 × 10−4 4.06
  wsnp_Ex_c2459_4591695 5B 212.53 A/G 10YL 2.75 × 10−5 2.13
      BLUP 6.45 × 10−5 2.25
  wsnp_Ex_c8510_14306239 6A 175.39 A/G 10YL 1.10 × 10−4 2.70
      BLUP 2.29 × 10−4 2.97
  wsnp_Ex_c46061_51675853 7B 25.00 A/G 10YZ 2.86 × 10−4 10.54
  wsnp_Ex_rep_c101269_86664147 7B 132.23 A/G 09YL 2.94 × 10−4 8.39
      10YZ 5.89 × 10−5 10.25
SNPS wsnp_BM140362B_Ta_1_1 1B 76.37 A/G 10TA 1.90 × 10−4 2.80
  wsnp_Ku_rep_c68484_67499824 3A 99.60 T/C 09YZ 2.46 × 10−4 8.19
  wsnp_Ex_rep_c67136_65617520 4B 108.15 T/C 09YZ 1.75 × 10−4 5.15
  wsnp_Ku_c21275_31007309 5A 85.17 A/C 09YL 2.83 × 10−4 4.49
  wsnp_RFL_Contig3939_4369467 5A 94.73 T/C 09YL 2.38 × 10− 4 4.84
  wsnp_Ex_c7713_13153321 6B 127.53 A/C 09TA 1.41 × 10− 4 11.88
KNPS wsnp_JD_c6974_8084752 3B 95.50 A/G 10TA 3.03 × 10−4 2.77
  wsnp_Ex_c6129_10723019 3B 97.26 T/C 09YZ 9.11 × 10−5 8.86
      10YZ 1.06 × 10− 4 7.79
  wsnp_Ku_c29102_39008953 3B 123.29 A/C 09TA 1.88 × 10−5 7.12
      09YL 7.46 × 10−5 12.61
      BLUP 9.61 × 10−7 11.49
  wsnp_Ku_c31407_41142340 3B 125.61 A/G 10YL 1.27 × 10− 4 8.77
  wsnp_Ex_c11837_18996495 3B 126.24 T/G 09YL 2.28 × 10−4 10.55
      BLUP 1.56 × 10− 4 8.69
  wsnp_Ex_c12781_20280445 3B 126.61 A/G 10YZ 1.43 × 10−4 9.05
      10YL 1.40 × 10−4 8.90
  wsnp_Ex_c13154_20784674 3B 127.87 T/C 09TA 8.85 × 10−5 7.86
      09YL 2.19 × 10− 4 11.25
      BLUP 9.62 × 10−6 11.53
  wsnp_Ex_c13154_20785032 3B 127.87 A/G 09TA 1.51 × 10−4 7.41
      BLUP 2.65 × 10−5 10.59
  wsnp_Ex_c13953_21831752 4A 13.89 T/C 09YZ 3.95 × 10−7 5.64
      10TA 9.75 × 10−6 6.42
  wsnp_Ex_c16551_25060833 5A 190.95 T/C 09TA 2.85 × 10−4 6.09
  wsnp_Ex_c1630_3105100 5B 161.77 A/G 10TA 1.04 × 10−4 2.03
  wsnp_Ex_c1302_2489542 5B 184.33 T/G 10YZ 2.35 × 10−4 2.72
  wsnp_Ku_c56917_60245833 5B 185.06 T/C 10YZ 1.31 × 10− 4 2.84
  wsnp_Ku_c19037_28455905 7B 57.38 A/G 09YZ 3.02 × 10−4 5.98
KWPS wsnp_Ex_rep_c106111_90308719 1A 12.73 T/G 09YL 1.37 × 10−4 10.81
      BLUP 1.11 × 10− 4 10.78
  wsnp_Ex_c1130_2166731 1D 54.49 A/G BLUP 8.41 × 10−5 2.78
  wsnp_Ex_rep_c69919_68881108 3A 117.88 A/G 10TA 3.02 × 10−4 2.74
  wsnp_Ex_rep_c104327_89077792 3A 118.07 A/G 09YZ 3.02 × 10−4 2.74
  wsnp_Ra_c19079_28210937 3A 123.35 A/C 09YL 2.91 × 10−4 2.97
  wsnp_Ex_c12341_19693570 3A 127.51 T/C 09TA 2.53 × 10−4 12.44
      10TA 1.00 × 10−5 10.36
      10YZ 1.21 × 10−4 11.94
  wsnp_Ku_c29102_39008953 3B 123.29 A/C 09YZ 1.93 × 10−4 3.15
  wsnp_Ex_c13154_20785032 3B 127.87 A/G 09TA 1.85 × 10−4 3.66
  wsnp_Ex_rep_c67136_65617520 4B 108.15 T/C 09YZ 2.98 × 10−4 10.43
  wsnp_JD_rep_c49046_33288885 5A 116.00 T/C 09YZ 1.52 × 10−4 10.51
      BLUP 2.97 × 10−5 11.94
  wsnp_Ku_c14275_22535693 5A 116.57 A/G 10TA 2.53 × 10−4 2.32
  wsnp_Ku_c14275_22535576 5A 116.83 T/C 10YZ 1.94 × 10−4 2.84
  wsnp_Ex_c43578_49857984 5A 130.98 T/C 09YL 2.91 × 10−4 12.48
      BLUP 1.24 × 10−4 12.76
  wsnp_Ex_rep_c101757_87064771 5A 133.01 T/C 09YZ 2.24 × 10−4 8.30
  wsnp_Ex_rep_c101757_87065169 5A 133.17 T/C 09TA 2.28 × 10−4 7.18
  wsnp_Ex_c57667_59284398 5B 125.89 T/C 09TA 8.37 × 10−5 5.19
  wsnp_Ex_c1050_2009301 6A 45.73 T/G 10TA 3.03 × 10−4 4.27
  wsnp_Ex_c19467_28423197 6B 50.70 A/G 09TA 1.56 × 10−4 4.80
  wsnp_Ex_c65899_64135487 7D 1.12 A/G 09YL 8.35 × 10−5 3.10
TKW wsnp_Ex_c3685_6723631 2A 9.91 A/G BLUP 1.65 × 10−4 4.76
  wsnp_BE406351A_Ta_2_2 2A 112.62 T/C 09TA 3.00 × 10−4 8.08
  wsnp_RFL_Contig2914_2757372 2B 211.84 A/G 10YL 1.35 × 10−4 8.27
  wsnp_Ku_rep_c69511_68887456 3A 59.73 T/C 09TA 1.68 × 10−4 11.41
      09YL 4.73 × 10−5 11.61
      09YZ 2.96 × 10−4 10.47
      BLUP 7.72 × 10−5 10.04
  wsnp_CAP12_c4769_2174195 4B 106.45 T/C 10TA 2.62 × 10−4 2.14
  wsnp_BF291478B_Ta_2_1 6B 80.00 T/C 09TA 1.61 × 10−4 4.65