Skip to main content

Table 2 Pfam analysis of MTase candidate genes in rice and Arabidopsis

From: Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis

Gene

Source

Accession

Description

Position

Gene

Source

Accession

Description

Position

(m2 2G)Trm1

Pfam

PF02005

m22G tRNA meth_tr

33–490

(mcm5U)Trm9

Pfam

PF08241

Methyltransferase domain

50–141

AT3G02320

pfam

PF02005

m22G tRNA meth_tr

11–466

AT1G36310

pfam

PF08241

Methyltransferase type 11

112–202

AT5G15810

pfam

PF02005

m22G tRNA meth_tr

109–564

LOC_Os02g51490

HMMPfam

PF08241.5

Methyltransf_11

106–196

LOC_Os10g21360

pfam

PF02005.9

TRM

58–438

     

LOC_Os03g57280

pfam

PF02005.9

TRM

19–476

(m1G)Trm10

Pfam

PF01746

tRNA (Guanine-1)-meth_tr

104–276

     

AT5G47680

pfam

PF01746

tRNA (guanine-N1-)-meth_tr

128–293

(m5U)Trm2

Pfam

PF01938

(Uracil-5)-meth_tr

164–227

LOC_Os02g49360

 

PF01746.14

tRNA_m1G_MT

128–293

AT3G21300

pfam

PF05958

(Uracil-5)-meth_tr

354–552

     

LOC_Os01g09750

HMMPfam

PF05958.4

tRNA_U5-meth_tr

366–554

(m2G)Trm11

Pfam

PF01170

Putative RNA methylase family UPF0020

184–297

     

AT3G26410

pfam

PF01170

Putative RNA methylase

193–315

(Gm)Trm3

Pfam

PF00588

tRNA/rRNA meth_tr, SpoU

1286–1428

LOC_Os02g35060

pfam

PF01170.11

UPF0020

193–315

AT4G17610

pfam

PF00588

tRNA/rRNA meth_tr, SpoU

1700–1842

     

LOC_Os03g01110

HMMPfam

PF00588.12

SpoU_methylase

1575–1716

(Am)Trm13

Pfam

PF11722

CCCH zinc finger in TRM13 protein

18–47

      

Pfam

PF05253

U11-48 K-like CHHC zinc finger

71–97

(m5C)Trm4

Pfam

PF01189

NOL1/NOP2/sun family

254–581

 

Pfam

PF05206

Methyltransferase TRM13

179–473

At4g40000

pfam

PF01189

NOL1/NOP2/sun family

155–350

AT4G01880

pfam

PF05206

Methyltransferase TRM13

167–445

At2g22400

pfam

PF01189

NOL1/NOP2/sun family

163–361

 

pfam

PF05253

U11-48 K-like CHHC zinc finger domain

42–66

LOC_Os09g29630

HMMPfam

PF01189.10

Nol1_Nop2_Fmu

168–364

 

pfam

PF11722

Zinc finger, CCCH-type, TRM13

7–36

LOC_Os08g37780

HMMPfam

PF01189.10

Nol1_Nop2_Fmu

185–388

LOC_Os03g61750

pfam

PF11722.1

zf-TRM13_CCCH

20–49

      

pfam

PF05253.5

zf-U11-48 K

61–86

(m1G)Trm5

Pfam

PF02475

tRNA transferase Trm5/Tyw2

177–436

 

pfam

PF05206.7

TRM13

181–247

AT3G56120

pfam

PF02475

tRNA transferase Trm5/Tyw2

116–411

     

AT4G27340

pfam

PF02475

tRNA transferase Trm5/Tyw2

343–542

(m1A)Trm61

Pfam

PF08704

tRNA meth_tr complex GCD14 subunit

72–362

LOC_Os01g29409

HMMPfam

PF02475.9

Met_10

309–505

AT5G14600

pfam

PF08704

tRNA meth_tr complex GCD14 subunit

9–313

LOC_Os02g39370

HMMPfam

PF02475.9

Met_10

156–442

LOC_Os04g25360

HMMPfam

PF08704.3

GCD14

14–321

     

LOC_Os04g25990

pfam

PF08704.3

GCD14

14–320

(Cm)Trm7

Pfam

PF01728

FtsJ-like meth_tr

21–207

     

AT5G01230

pfam

PF01728

Ribosomal RNA meth_tr RrmJ/FtsJ

21–209

(m3C)Trm140

Pfam

PF08242

Methyltransferase domain

439–543

AT4G25730

pfam

PF01728

Ribosomal RNA meth_tr RrmJ/FtsJ

22–200

AT2G26200

pfam

PF08242

Methyltransferase type 12

79–180

AT5G13830

pfam

PF01728

Ribosomal RNA meth_tr RrmJ/FtsJ

19–223

AT1G54650

pfam

PF08242

Methyltransferase type 12

87–214

LOC_Os06g49140

HMMPfam

PF01728.12

FtsJ

21–209

LOC_Os03g04940

pfam

PF08242.5

Methyltransf_12

63–163

LOC_Os05g49230

HMMPfam

PF01728.12

FtsJ

22–201

 

pfam

PF10294.2

Methyltransf_16

326–485

LOC_Os09g27270

HMMPfam

PF01728.12

FtsJ

22–142

LOC_Os07g23169

pfam

PF08242.5

Methyltransf_12

96–229

LOC_Os03g60750

HMMPfam

PF01728.12

FtsJ

20–231

     

(m7G)Trm8

Pfam

PF02390

Putative meth_tr

74–279

     

AT5G24840

pfam

PF02390

tRNA (guanine-N-7) meth_tr

48–246

     

AT5G17660

pfam

PF02390

tRNA (guanine-N-7) meth_tr

115–305

     

LOC_Os06g12990

HMMPfam

PF02390.10

Methyltransf_4

58–254

     

LOC_Os01g35170

HMMPfam

PF02390.10

Methyltransf_4

2–183

    Â