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Table 5 The number of differentially expressed unigenes annotated

From: De novo assembly and comparative analysis of the transcriptome of embryogenic callus formation in bread wheat (Triticum aestivum L.)

 

ALL

COG

GO

KEGG

KOG

Pfam

SWISS

Nr

IME3 vs. ME3 (no.)

2579

515

1873

713

1013

1875

1720

2545

%

81.08

16.19

58.88

22.41

31.85

58.94

54.07

80.01

IME6 vs. ME6 (no.)

1878

387

1433

542

722

1416

1265

1875

%

90.07

18.56

68.73

26.00

34.63

67.91

60.67

89.93

IME15 vs. ME15 (no.)

1271

241

919

333

431

917

831

1261

%

86.58

16.42

62.60

22.68

29.36

62.47

56.61

85.90

IME6 vs.IME3 (no.)

1302

233

916

344

489

950

830

1284

%

84.77

15.17

59.64

22.40

31.84

61.85

54.04

83.59

IME15 vs. IME6 (no.)

1450

282

1035

396

514

1037

956

1430

%

86.16

16.76

61.50

23.53

30.54

61.62

56.80

84.97

ME6 vs. ME3 (no.)

1525

422

1063

546

692

1095

956

1519

%

89.13

24.66

62.13

31.91

40.44

64.00

55.87

88.78

ME15 vs. ME6 (no.)

1274

331

897

416

526

925

789

1260

%

86.55

22.49

60.94

28.26

35.73

62.84

53.60

85.60

  1. ME3, ME6, and ME15 are mature embryos at 3 d, 6 d, and 15 d of culture, respectively
  2. IME3, IME6, and IME15 are immature embryos at 3 d, 6 d, and 15d of culture, respectively