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Table 5 The number of differentially expressed unigenes annotated

From: De novo assembly and comparative analysis of the transcriptome of embryogenic callus formation in bread wheat (Triticum aestivum L.)

  ALL COG GO KEGG KOG Pfam SWISS Nr
IME3 vs. ME3 (no.) 2579 515 1873 713 1013 1875 1720 2545
% 81.08 16.19 58.88 22.41 31.85 58.94 54.07 80.01
IME6 vs. ME6 (no.) 1878 387 1433 542 722 1416 1265 1875
% 90.07 18.56 68.73 26.00 34.63 67.91 60.67 89.93
IME15 vs. ME15 (no.) 1271 241 919 333 431 917 831 1261
% 86.58 16.42 62.60 22.68 29.36 62.47 56.61 85.90
IME6 vs.IME3 (no.) 1302 233 916 344 489 950 830 1284
% 84.77 15.17 59.64 22.40 31.84 61.85 54.04 83.59
IME15 vs. IME6 (no.) 1450 282 1035 396 514 1037 956 1430
% 86.16 16.76 61.50 23.53 30.54 61.62 56.80 84.97
ME6 vs. ME3 (no.) 1525 422 1063 546 692 1095 956 1519
% 89.13 24.66 62.13 31.91 40.44 64.00 55.87 88.78
ME15 vs. ME6 (no.) 1274 331 897 416 526 925 789 1260
% 86.55 22.49 60.94 28.26 35.73 62.84 53.60 85.60
  1. ME3, ME6, and ME15 are mature embryos at 3 d, 6 d, and 15 d of culture, respectively
  2. IME3, IME6, and IME15 are immature embryos at 3 d, 6 d, and 15d of culture, respectively