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Table 1 SNPs associated with resistance to Kr2 isolate, revealed by GLM analysis and arranged according p-values

From: Identification of 50 K Illumina-chip SNPs associated with resistance to spot blotch in barley

#

Marker

Chr

Physical map position (bp)

Genetic map position (cM)

p-value

Alleles

MAF

1

JHI-Hv50k-2016-157070

3H

17,888,495

na

6.04E-08*

C/G

С(0.19)

2

JHI-Hv50k-2016-156842

3H

17,559,189

na

1.20E-06*

A/G

A(0.18)

3

JHI-Hv50k-2016-33568

1H

446,893,297

na

1.29E-06*

G/T

G(0.15)

4

JHI-Hv50k-2016-19966

1H

74,337,494

na

2.21E-06

G/T

G(0.27)

5

JHI-Hv50k-2016-407341

6H

462,119,913

na

6.35E-06

T/C

T(0.17)

6

SCRI_RS_83731

2H

na

57.0

9.86E-06

T/G

T(0.21)

7

SCRI_RS_162917

2H

517,229,083

57.2

9.86E-06

A/G

A(0.21)

8

SCRI_RS_233449

2H

520,779,376

57.0

9.86E-06

G/A

G(0.21)

9

SCRI_RS_186769

2H

na

57.4

1.16E-05

G/C

G(0.22)

10

SCRI_RS_132839

2H

524,447,113

57.0

1.16E-05

A/G

A(0.22)

11

SCRI_RS_136740

2H

524,817,496

57.2

1.16E-05

A/C

A(0.22)

12

BOPA1_3355–605

2H

na

na

1.33E-05

C/A

C(0.19)

13

SCRI_RS_153880

2H

na

59.3

1.33E-05

T/C

T(0.19)

14

SCRI_RS_206529

2H

na

60.5

1.33E-05

A/G

A(0.19)

15

BOPA2_12_11504

2H

520,773,185

57.0

1.33E-05

A/G

A(0.19)

16

BOPA2_12_30108

2H

556,024,085

59.3

1.33E-05

A/C

A(0.19)

17

JHI-Hv50k-2016–98667

2H

559,662,446

na

1.33E-05

A/G

A(0.19)

18

SCRI_RS_141789

2H

551,217,066

59.3

1.33E-05

A/C

A(0.19)

19

SCRI_RS_182631

1H

74,327,682

46.8

1.44E-05

G/A

G(0.24)

20

SCRI_RS_188937

1H

74,325,931

46.8

1.44E-05

T/C

T(0.24)

21

JHI-Hv50k-2016-19943

1H

74,327,370

na

1.57E-05

C/T

C(0.26)

22

BOPA2_12_10159

1H

98,741,757

47.7

2.19E-05

C/A

C(0.33)

23

BOPA2_12_30438

1H

98,026,175

47.7

2.19E-05

A/G

A(0.33)

24

JHI-Hv50k-2016-20725

1H

96,478,890

na

2.19E-05

C/G

C(0.33)

25

BOPA2_12_10235

1H

80,265,474

47.7

2.42E-05

A/C

A(0.29)

26

JHI-Hv50k-2016-159556

3H

24,223,023

na

2.64E-05

G/A

G(0.41)

27

JHI-Hv50k-2016–99999

2H

589,523,785

na

3.04E-05

T/C

T(0.48)

28

JHI-Hv50k-2016-226122

4H

645,489

na

3.04E-05

A/G

A(0.37)

29

BOPA2_12_31179

1H

449,874,128

58.4

3.06E-05

C/G

C(0.13)

30

JHI-Hv50k-2016-20076

1H

80,292,944

na

3.41E-05

C/T

C(0.32)

31

SCRI_RS_85918

1H

80,292,373

47.7

3.41E-05

G/A

G(0.32)

32

JHI-Hv50k-2016–99440

2H

582,800,216

na

4.11E-05

A/G

A(0.36)

33

BOPA1_2634–2228

2H

520,264,176

na

4.53E-05

C/A

C(0.22)

34

BOPA1_5160–268

2H

520,778,105

na

4.53E-05

G/A

G(0.22)

35

SCRI_RS_191136

2H

520,437,064

57.0

4.53E-05

T/C

T(0.22)

36

JHI-Hv50k-2016-156387

3H

16,420,851

na

5.56E-05

C/A

C(0.10)

37

JHI-Hv50k-2016-156999

3H

17,817,242

na

5.80E-05

A/C

A(0.25)

38

JHI-Hv50k-2016-157182

3H

17,954,351

na

5.80E-05

T/A

T(0.25)

39

JHI-Hv50k-2016-155569

3H

15,256,329

na

5.85E-05

A/G

A(0.14)

40

BOPA2_12_10035

2H

463,231,068

56.7

6.51E-05

G/A

G(0.19)

41

SCRI_RS_161169

2H

483,288,774

56.7

6.51E-05

G/A

G(0.19)

42

JHI-Hv50k-2016–92202

2H

309,655,073

na

2.17E-04

T/C

T(0.21)

43

BOPA2_12_30179

2H

na

56.4

2.94E-04

A/G

A(0.19)

44

SCRI_RS_97417

3H

15,255,540

12.1

3.91E-04

C/T

C(0.34)

45

JHI-Hv50k-2016-156336

3H

16,375,848

na

4.23E-04

A/T

A(0.11)

46

BOPA1_5254–1845

2H

175,163,708

na

4.59E-04

G/A

G(0.18)

47

SCRI_RS_109192

2H

175,053,470

na

4.59E-04

G/T

G(0.18)

48

JHI-Hv50k-2016-155951

3H

15,469,647

na

7.68E-04

T/A

T(0.30)

  1. 1–3 (underlined bold): SNPs, which are significant according Bonferroni multiple test correction at 5% (p < 1.8302E-6).4–8 (bold): suggestive SNPs. MAF – Minor allele frequency. Chr – chromosome, na – not available. Genetic map positions are given according Morex / Barke iSelect map (http://bioinf.hutton.ac.uk/iselect/app/)