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Table 1 SNPs associated with resistance to Kr2 isolate, revealed by GLM analysis and arranged according p-values

From: Identification of 50 K Illumina-chip SNPs associated with resistance to spot blotch in barley

# Marker Chr Physical map position (bp) Genetic map position (cM) p-value Alleles MAF
1 JHI-Hv50k-2016-157070 3H 17,888,495 na 6.04E-08* C/G С(0.19)
2 JHI-Hv50k-2016-156842 3H 17,559,189 na 1.20E-06* A/G A(0.18)
3 JHI-Hv50k-2016-33568 1H 446,893,297 na 1.29E-06* G/T G(0.15)
4 JHI-Hv50k-2016-19966 1H 74,337,494 na 2.21E-06 G/T G(0.27)
5 JHI-Hv50k-2016-407341 6H 462,119,913 na 6.35E-06 T/C T(0.17)
6 SCRI_RS_83731 2H na 57.0 9.86E-06 T/G T(0.21)
7 SCRI_RS_162917 2H 517,229,083 57.2 9.86E-06 A/G A(0.21)
8 SCRI_RS_233449 2H 520,779,376 57.0 9.86E-06 G/A G(0.21)
9 SCRI_RS_186769 2H na 57.4 1.16E-05 G/C G(0.22)
10 SCRI_RS_132839 2H 524,447,113 57.0 1.16E-05 A/G A(0.22)
11 SCRI_RS_136740 2H 524,817,496 57.2 1.16E-05 A/C A(0.22)
12 BOPA1_3355–605 2H na na 1.33E-05 C/A C(0.19)
13 SCRI_RS_153880 2H na 59.3 1.33E-05 T/C T(0.19)
14 SCRI_RS_206529 2H na 60.5 1.33E-05 A/G A(0.19)
15 BOPA2_12_11504 2H 520,773,185 57.0 1.33E-05 A/G A(0.19)
16 BOPA2_12_30108 2H 556,024,085 59.3 1.33E-05 A/C A(0.19)
17 JHI-Hv50k-2016–98667 2H 559,662,446 na 1.33E-05 A/G A(0.19)
18 SCRI_RS_141789 2H 551,217,066 59.3 1.33E-05 A/C A(0.19)
19 SCRI_RS_182631 1H 74,327,682 46.8 1.44E-05 G/A G(0.24)
20 SCRI_RS_188937 1H 74,325,931 46.8 1.44E-05 T/C T(0.24)
21 JHI-Hv50k-2016-19943 1H 74,327,370 na 1.57E-05 C/T C(0.26)
22 BOPA2_12_10159 1H 98,741,757 47.7 2.19E-05 C/A C(0.33)
23 BOPA2_12_30438 1H 98,026,175 47.7 2.19E-05 A/G A(0.33)
24 JHI-Hv50k-2016-20725 1H 96,478,890 na 2.19E-05 C/G C(0.33)
25 BOPA2_12_10235 1H 80,265,474 47.7 2.42E-05 A/C A(0.29)
26 JHI-Hv50k-2016-159556 3H 24,223,023 na 2.64E-05 G/A G(0.41)
27 JHI-Hv50k-2016–99999 2H 589,523,785 na 3.04E-05 T/C T(0.48)
28 JHI-Hv50k-2016-226122 4H 645,489 na 3.04E-05 A/G A(0.37)
29 BOPA2_12_31179 1H 449,874,128 58.4 3.06E-05 C/G C(0.13)
30 JHI-Hv50k-2016-20076 1H 80,292,944 na 3.41E-05 C/T C(0.32)
31 SCRI_RS_85918 1H 80,292,373 47.7 3.41E-05 G/A G(0.32)
32 JHI-Hv50k-2016–99440 2H 582,800,216 na 4.11E-05 A/G A(0.36)
33 BOPA1_2634–2228 2H 520,264,176 na 4.53E-05 C/A C(0.22)
34 BOPA1_5160–268 2H 520,778,105 na 4.53E-05 G/A G(0.22)
35 SCRI_RS_191136 2H 520,437,064 57.0 4.53E-05 T/C T(0.22)
36 JHI-Hv50k-2016-156387 3H 16,420,851 na 5.56E-05 C/A C(0.10)
37 JHI-Hv50k-2016-156999 3H 17,817,242 na 5.80E-05 A/C A(0.25)
38 JHI-Hv50k-2016-157182 3H 17,954,351 na 5.80E-05 T/A T(0.25)
39 JHI-Hv50k-2016-155569 3H 15,256,329 na 5.85E-05 A/G A(0.14)
40 BOPA2_12_10035 2H 463,231,068 56.7 6.51E-05 G/A G(0.19)
41 SCRI_RS_161169 2H 483,288,774 56.7 6.51E-05 G/A G(0.19)
42 JHI-Hv50k-2016–92202 2H 309,655,073 na 2.17E-04 T/C T(0.21)
43 BOPA2_12_30179 2H na 56.4 2.94E-04 A/G A(0.19)
44 SCRI_RS_97417 3H 15,255,540 12.1 3.91E-04 C/T C(0.34)
45 JHI-Hv50k-2016-156336 3H 16,375,848 na 4.23E-04 A/T A(0.11)
46 BOPA1_5254–1845 2H 175,163,708 na 4.59E-04 G/A G(0.18)
47 SCRI_RS_109192 2H 175,053,470 na 4.59E-04 G/T G(0.18)
48 JHI-Hv50k-2016-155951 3H 15,469,647 na 7.68E-04 T/A T(0.30)
  1. 1–3 (underlined bold): SNPs, which are significant according Bonferroni multiple test correction at 5% (p < 1.8302E-6).4–8 (bold): suggestive SNPs. MAF – Minor allele frequency. Chr – chromosome, na – not available. Genetic map positions are given according Morex / Barke iSelect map (http://bioinf.hutton.ac.uk/iselect/app/)