Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

Dmitriev, Alexey A.; Krasnov, George S.; Rozhmina, Tatiana A.; Novakovskiy, Roman O.; Snezhkina, Anastasiya V.; Fedorova, Maria S.; Yurkevich, Olga Yu.; Muravenko, Olga V.; Bolsheva, Nadezhda L.; Kudryavtseva, Anna V.; Melnikova, Nataliya V.

doi:10.1186/s12870-017-1192-2

Table 3 Gene ontology analysis for the top 100 upregulated genes in the flax genotypes susceptible to Fusarium oxysporum (AP5 and TOST)

From: Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

GO category	Term	Observed number of genes	Expected number of genes	p-value	FDR
GO:0002181	cytoplasmic translation	12	0.24	0	0
GO:0003735	structural constituent of ribosome	30	1.61	1.6E-32	1.3E-28
GO:0006412	translation	29	1.87	1.9E-28	9.8E-25
GO:0005198	structural molecule activity	30	2.30	1.3E-27	5.0E-24
GO:0044391	ribosomal subunit	21	1.08	8.8E-23	2.7E-19
GO:0030529	intracellular ribonucleoprotein complex	34	4.47	1.8E-22	4.7E-19
GO:0044445	cytosolic part	21	1.26	2.4E-21	5.3E-18
GO:0022625	cytosolic large ribosomal subunit	14	0.46	1.5E-18	2.8E-15
GO:0015934	large ribosomal subunit	14	0.61	2.3E-16	3.9E-13
GO:0009059	macromolecule biosynthetic process	41	11.92	5.1E-14	8.0E-11
GO:0034645	cellular macromolecule biosynthetic process	39	11.27	2.2E-13	3.1E-10
GO:1,901,576	organic substance biosynthetic process	49	19.57	4.9E-12	6.3E-09
GO:0009058	biosynthetic process	49	20.57	3.0E-11	3.6E-08
GO:0044249	cellular biosynthetic process	47	19.05	3.9E-11	4.4E-08
GO:0032991	macromolecular complex	41	15.18	2.4E-10	2.5E-07
GO:0022627	cytosolic small ribosomal subunit	7	0.32	5.9E-09	5.7E-06
GO:0005840	ribosome	11	1.28	1.1E-08	1.0E-05
GO:0044267	cellular protein metabolic process	29	9.71	4.8E-08	4.2E-05
GO:0015935	small ribosomal subunit	7	0.47	2.0E-07	1.6E-04
GO:0019538	protein metabolic process	30	11.46	5.0E-07	3.9E-04
GO:0006414	translational elongation	4	0.07	8.9E-07	6.6E-04
GO:0045460	sterigmatocystin metabolic process	4	0.13	1.2E-05	8.2E-03
GO:0045461	sterigmatocystin biosynthetic process	4	0.13	1.2E-05	8.2E-03
GO:1,901,378	organic heteropentacyclic compound biosynthetic process	4	0.18	3.5E-05	2.3E-02
GO:1,901,376	organic heteropentacyclic compound metabolic process	4	0.18	3.7E-05	2.3E-02
GO:0009403	toxin biosynthetic process	4	0.21	6.6E-05	3.9E-02
GO:0070069	cytochrome complex	3	0.10	6.8E-05	3.9E-02

Note: One gene can belong to several GO categories. FDR – false discovery rate

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