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Table 3 Gene ontology analysis for the top 100 upregulated genes in the flax genotypes susceptible to Fusarium oxysporum (AP5 and TOST)

From: Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)

GO
category
Term Observed number of genes Expected number of genes p-value FDR
GO:0002181 cytoplasmic translation 12 0.24 0 0
GO:0003735 structural constituent of ribosome 30 1.61 1.6E-32 1.3E-28
GO:0006412 translation 29 1.87 1.9E-28 9.8E-25
GO:0005198 structural molecule activity 30 2.30 1.3E-27 5.0E-24
GO:0044391 ribosomal subunit 21 1.08 8.8E-23 2.7E-19
GO:0030529 intracellular ribonucleoprotein complex 34 4.47 1.8E-22 4.7E-19
GO:0044445 cytosolic part 21 1.26 2.4E-21 5.3E-18
GO:0022625 cytosolic large ribosomal subunit 14 0.46 1.5E-18 2.8E-15
GO:0015934 large ribosomal subunit 14 0.61 2.3E-16 3.9E-13
GO:0009059 macromolecule biosynthetic process 41 11.92 5.1E-14 8.0E-11
GO:0034645 cellular macromolecule biosynthetic process 39 11.27 2.2E-13 3.1E-10
GO:1,901,576 organic substance biosynthetic process 49 19.57 4.9E-12 6.3E-09
GO:0009058 biosynthetic process 49 20.57 3.0E-11 3.6E-08
GO:0044249 cellular biosynthetic process 47 19.05 3.9E-11 4.4E-08
GO:0032991 macromolecular complex 41 15.18 2.4E-10 2.5E-07
GO:0022627 cytosolic small ribosomal subunit 7 0.32 5.9E-09 5.7E-06
GO:0005840 ribosome 11 1.28 1.1E-08 1.0E-05
GO:0044267 cellular protein metabolic process 29 9.71 4.8E-08 4.2E-05
GO:0015935 small ribosomal subunit 7 0.47 2.0E-07 1.6E-04
GO:0019538 protein metabolic process 30 11.46 5.0E-07 3.9E-04
GO:0006414 translational elongation 4 0.07 8.9E-07 6.6E-04
GO:0045460 sterigmatocystin metabolic process 4 0.13 1.2E-05 8.2E-03
GO:0045461 sterigmatocystin biosynthetic process 4 0.13 1.2E-05 8.2E-03
GO:1,901,378 organic heteropentacyclic compound biosynthetic process 4 0.18 3.5E-05 2.3E-02
GO:1,901,376 organic heteropentacyclic compound metabolic process 4 0.18 3.7E-05 2.3E-02
GO:0009403 toxin biosynthetic process 4 0.21 6.6E-05 3.9E-02
GO:0070069 cytochrome complex 3 0.10 6.8E-05 3.9E-02
  1. Note: One gene can belong to several GO categories. FDR – false discovery rate