Table 2 Gene ontology analysis for the top 100 upregulated genes in flax genotypes resistant to Fusarium oxysporum (Dakota, #3896, #3896 × AP5, and Dakota × AP5)
GO category | Term | Observed number of genes | Expected number of genes | p-value | FDR |
|---|---|---|---|---|---|
GO:0008137 | NADH dehydrogenase (ubiquinone) activity | 6 | 0.15 | 1.5E-08 | 1.1E-04 |
GO:0050136 | NADH dehydrogenase (quinone) activity | 6 | 0.15 | 1.5E-08 | 1.1E-04 |
GO:0003954 | NADH dehydrogenase activity | 6 | 0.17 | 3.3E-08 | 1.7E-04 |
GO:1,990,204 | oxidoreductase complex | 7 | 0.38 | 5.0E-08 | 1.9E-04 |
GO:0005747 | mitochondrial respiratory chain complex I | 5 | 0.14 | 1.2E-07 | 2.8E-04 |
GO:0045271 | respiratory chain complex I | 5 | 0.14 | 1.2E-07 | 2.8E-04 |
GO:0030964 | NADH dehydrogenase complex | 5 | 0.14 | 1.4E-07 | 2.8E-04 |
GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 6 | 0.23 | 1.5E-07 | 2.8E-04 |
GO:0044455 | mitochondrial membrane part | 8 | 0.61 | 2.0E-07 | 3.4E-04 |
GO:0044429 | mitochondrial part | 14 | 2.58 | 4.0E-07 | 6.2E-04 |
GO:0016651 | oxidoreductase activity, acting on NAD(P)H | 7 | 0.56 | 1.5E-06 | 2.1E-03 |
GO:0009435 | NAD biosynthetic process | 3 | 0.04 | 2.8E-05 | 3.6E-02 |
GO:1,901,566 | organonitrogen compound biosynthetic process | 12 | 2.93 | 4.4E-05 | 5.3E-02 |