Table 1 RNA sequencing read counts and alignment statistics for all the samples used for de novo transcriptome assembly
Sample name | Raw Reads | Cleaned reads | % Read pairs mapped concordantly |
|---|---|---|---|
Male Early A | 21,719,110 | 13,216,446 | 76.33% |
Male Early B | 22,080,977 | 12,149,633 | 74.84% |
Female Early A | 25,607,195 | 15,634,598 | 76.34% |
Female Early B | 25,433,955 | 15,316,996 | 75.94% |
GyM-H Early A | 27,936,206 | 17,378,706 | 76.67% |
GyM-H Early B | 27,617,808 | 17,107,330 | 76.69% |
Ag-H Early A | 26,147,527 | 15,140,736 | 71.02% |
Ag-H Early B | 25,392,540 | 15,128,539 | 69.35% |
Male Middle A | 25,502,209 | 15,490,027 | 76.70% |
Male Middle B | 25,837,400 | 15,919,727 | 75.27% |
GyM-H Middle A | 28,465,770 | 17,441,923 | 76.90% |
GyM-H Middle B | 24,834,839 | 16,474,470 | 77.43% |
Total | 306,575,536 | 186,399,131 | Â |