Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses

Ding, Na; Wang, Aimin; Zhang, Xiaojun; Wu, Yunxiang; Wang, Ruyuan; Cui, Huihui; Huang, Rulin; Luo, Yonghai

doi:10.1186/s12870-017-1179-z

Table 1 Comparison of putative coding sequences of 43 GST genes obtained from transcriptomes (CDS1) and laboratory cloning (CDS2)

From: Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses

Gene name	Length of CDS1 (bp)	Length of CDS2 (bp)	△Length (bp)	Type of Polymorphism	Alignment length (bp)	Identical (bp)	Identity (%)
IbDHARl	642	642	0	SNP	642	638	99.38
IbDHAR2	813	813	0	SNP	813	808	99.39
IbEFlBγl	1260	1270	10	SNP & InDel	1272	1245	97.88
IbEFlBγ2	1260	1260	0	SNP	1260	1253	99.44
IbEF1Bγ3	1293	1260	−33	SNP & InDel	1261	1155	91.59
IbGSTFl	675	675	0	SNP	675	668	98.96
IbGSTF2	642	739	97	SNP & InDel	647	264	40.80
IbGSTF3	645	643	−2	SNP	643	638	99.22
IbGSTLl	711	711	0	SNP	711	710	99.86
IbGSTL2	705	705	0	SNP	705	694	98.44
IbGSTL3	810	810	0	SNP	810	804	99.26
IbGSTTl	708	708	0	SNP	708	691	97.60
IbGSTT2	708	708	0	SNP	708	700	98.87
IbGSTUl	675	673	−2	SNP	673	667	99.11
IbGSTU2	666	666	0	N.A.	666	666	100.00
IbGSTU3	660	661	1	SNP & InDel	661	613	92.74
IbGSTU4	690	690	0	N.A.	690	690	100.00
IbGSTU5	684	684	0	SNP	684	679	99.27
IbGSTU6	672	663	−9	SNP	653	640	98.01
IbGSTU7	714	728	14	SNP & InDel	729	688	94.38
IbGSTU8	672	663	−9	SNP	663	650	98.04
IbGSTU9	714	714	0	SNP	714	707	99.02
IbGSTUlO	660	738	78	SNP & InDel	738	652	88.35
IbGSTUll	684	661	−23	SNP & InDel	651	616	94.62
IbGSTUl2	675	675	0	SNP	675	673	99.70
IbGSTUl3	672	672	0	SNP	672	658	97.92
IbGSTUl4	672	672	0	SNP	672	637	94.79
IbGSTUl5	687	689	2	SNP & InDel	689	674	97.82
IbGSTUl6	672	660	−12	SNP	660	646	97.88
IbGSTUl7	669	669	0	SNP	669	656	98.06
IbGSTUl8	666	663	−3	SNP	663	659	99.40
IbGSTUl9	729	714	−15	SNP & InDel	713	691	96.91
IbGSTU2O	678	673	−5	SNP	673	664	98.66
IbGSTU2l	684	684	0	SNP	684	676	98.83
IbGSTU22	687	687	0	SNP	687	667	97.09
IbGSTU23	702	702	0	SNP	702	699	99.57
IbGSTU24	669	665	−4	SNP	665	657	98.80
IbGSTU25	687	680	−7	SNP	680	671	98.68
IbGSTU26	744	837	93	SNP & InDel	837	739	88.29
IbGSTU27	672	662	−10	SNP & InDel	665	633	95.19
IbGSTZl	900	894	−6	SNP & InDel	900	876	97.33
IbGSTZ2	672	672	0	SNP	672	668	99.41
IbGSTZ3	672	666	−6	SNP & InDel	666	659	98.95

Note: SNP single nucleotide polymorphism, InDel insertion or deletion

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ISSN: 1471-2229

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