Table 3 Classification of Class IV-Su(var) proteins
From: Phylogenetic relationship and domain organisation of SET domain proteins of Archaeplastida
Class | Â | Type | Domain Architecture | Species | Extra Domains | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
At | Os | Pa | Sm | Pp | Mp | Nm | Kf | Mr | Mpu | Ot | Ol | Cv | Cr | Vc | Cp | |||||
IV | IV-1 | 1A | SRA-PreSET-SET | + | + | + | + | + | – | + | + | – | + | – | – | + | + | + | – | DUF3574, Treacle, PPR, Pinin_SDK, COG3440 |
1B | SRA-SET | – | – | – | – | – | – | – | – | – | + | – | – | + | – | – | – |  | ||
1C | SRA-PreSET-SET-SET | – | – | – | – | – | – | – | – | – | – | – | – | – | + | – | – |  | ||
IV-2 | 2A | PreSET-SET | + | + | + | + | + | + | + | + | – | + | – | – | – | – | – | – | LaMG, COG5281 | |
2B | PHD-PreSET-SET | – | – | – | + | – | – | – | – | – | – | – | – | – | – | – | – | TPR | ||
2C | ZnF_C2H2-ZnF_C2H2-PreSET-SET-PostSET | – | – | – | – | – | + | – | – | – | – | – | – | – | – | – | – |  | ||
2D | WIYLD-PreSET-SET | + | + | + | – | – | + | – | – | – | – | – | – | – | – | – | – | DUF5102, CNDH2_M | ||
2E | PreSET-SET-PostSET | – | + | – | – | – | – | + | – | – | – | – | – | – | – | – | – |  | ||
2F | ZnF_PreSET-SET | – | + | + | – | – | – | – | – | – | – | – | – | – | – | – | – |  | ||
2G | PreSET-AWS-SET | + | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – |  | ||
IV-Orphan | SET | – | – | – | – | + | + | – | + | – | + | + | + | + | + | + | + |  | ||