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Table 2 Full set of fruit proteins differentially abundant in (A) cv. Aragon, (B) cv. Gladis

From: Target proteins reprogrammed by As and As + Si treatments in Solanum lycopersicum L. fruit

aspot n° bProtein name cGene name dOrganism eScore fCov. % gExp. Mr. (kDa)/pI hTh. Mr. (kDa)/pI iBLAST protein l gene name midentity % nTh. Mr. (kDa) oCov. %
A)
202 UPF0725 protein At1g27860 At1g27860 A. thaliana 31 22 31/4,5 33,4/5,41 uncharacterized protein LOC101252956 (predicted) Solyc03g005820.2 29 25,5 34
1204 14-3-3 protein 2 Solyc12g057110.2 S. lycopersicum 32 22 30/4,5 29,0/4,72      
2103 calmodulin-like protein 3 CML3 O. sativa 24 44 23/5,0 20,3/4,62 calmodulin Solyc03g098050.2 65 16,8 84
3405 actin-51 (Fragment) Solyc11g005330.1 S. Lycopersicum 110 41 40/5,5 37,3/5,28      
3602 probable lipid-A-disaccharide synthase, mitochondrial LPXB A. thaliana 27 7 55/5,5 51,9/9,0 probable lipid-A-disaccharide synthase, mitochondrial (predicted) Solyc07g049740.2 60 51,8 94
4302 annexin p34 Solyc04g073990.2 S. Lycopersicum 100 88 35/5,5 35,7/6,41      
4803 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic Solyc12g042060.1 S. Lycopersicum 28 28 >97/5,5 102,5/5,8      
5004 pathogenesis-related protein STH-2-like Solyc09g090980.2 S. Lycopersicum 78 98 18/5,5 17,2/5,5      
5305 cyclin-D6-1 CYCD6-1 T. aestivum 42 12 35/5,8 34,6/5,5 putative cyclin-D6-1 Solyc07g054950.1 33 35,4 80
5602 seed biotin-containing protein SBP65 SBP65 P. sativum 75 42 60/5,8 59,6/5,9 seed biotin-containing protein SBP65-like isoform X1 Solyc10g008040.2 34 66,1 62
5702 flavonol sulfotransferase-like N/A F. bidentis 68 49 66/6,0 36,2/5,8 cytosolic sulfotransferase 12-like (predicted) Solyc05g011870.1 45 38,6 98
5706 nucleolin 2 NUCL2 A. thaliana 41 22 70/6,2 69,0/5,0 nucleolin 1 isoform X1 (predicted) Solyc02g021220.1 47 65,7 53
6101 eukaryotic translation initiation factor 5A-2 Solyc07g005560.2.1 S. Lycopersicum 89 76 20/6,5 17,7/5,8      
6102 small heat shock protein, chloroplastic Solyc03g082420.2 S. Lycopersicum 67 56 25/6,3 26,3/7,8      
6103 PHD finger protein ALFIN-LIKE 3 OsI_14081 O. sativa 50 44 25/6,5 28,3/5,7 PHD finger protein ALFIN-LIKE 2-like (predicted) Solyc10g076690.1 70 27 93
6303 ADP, ATP carrier protein 2, mitochondrial ANT-G2 T. aestivum 47 48 35/6,2 35,9/9,0 ADP/ATP translocator Solyc11g062130.1 88 41,9 98
7103 protein LURP-one-related 1 At1g33840 A. thaliana 41 37 23/6,6 25,7/8,6 protein LURP-one-related 10-like (predicted) Solyc10g085420.1 53 23,8 82
7503 alcohol dehydrogenase 2 ADH2 S. Lycopersicum 49 49 46/6,8 41,8/6,0      
7705 F-box/WD-40 repeat-containing protein At5g21040 At5g21040 A. thaliana 40 33 66/6,7 61,1/8,5 F-box/WD-40 repeat-containing protein At5g21040-like (predicted) Solyc06g073650.1 59 60,9 100
8105 growth-regulating factor 10 GRF10 O. sativa 43 16 22/6,8 22,5/9,0 growth-regulating factor 9-like (predicted) Solyc08g079800.2 59 24,6 51
8202 VQ motif-containing protein 4 VQ4 A. thaliana 39 32 28/6,7 26,96/9,8 uncharacterized protein LOC101257285 (predicted) Solyc02g078030.1 62 25,1 79
8701 V-type proton ATPase catalytic subunit N/A B. vulgaris 40 37 66/6,8 68,8/5,1 vacuolar H + −ATPase A2 subunit isoform Solyc06g063330.2 92 68,5 100
B)
302 E3 ubiquitin-protein ligase CHIP CHIP A. thaliana 27 42 35/4,7 32,1/6,1 E3 ubiquitin-protein ligase CHIP (predicted) Solyc06g083150.2 69 31,6 97
502 F-box protein At4g00755 At4g00755 A. thaliana 24 22 44/4,4 43,1/4,9 F-box protein At4g00755-like (predicted) Solyc03g026170.2 54 41,1 81
1003 Heavy metal-associated isoprenylated plant protein HIPP26 A. thaliana 26 35 15/5,0 17,2/9,3 heavy metal-associated isoprenylated plant protein 26-like (predicted) Solyc01g111600.2 85 17,2 100
1305 GDSL esterase/lipase EXL4 EXL4 A. thaliana 18 17 40/5,1 38,3/9,0 GDSL esterase/lipase EXL3-like (predicted) Solyc04g082390.2 42 43,7 91
1401 SKP1-like protein 21 ASK21 A. thaliana 18 18 40/5,0 40,3/5,6 SKP1-like protein 21 isoform X1 (predicted) Solyc06g036070.2 65 40,1 96
1803 heat shock 70 kDa protein HSP70 Z. mays 36 26 70/5,2 70,8/5,22 heat shock cognate 70 kDa protein 1 Solyc10g086410.2 89 70,9 99
2802 cell division cycle protein 48 homolog CDC48 G. max 69 33 97/5,3 90,5/5,2 cell division cycle protein 48 homolog (predicted) Solyc06g074980.2 93 90,1 100
2805 sucrose synthase 7 SUS7 O. sativa 25 9 97/5,3 98,4/8,0 sucrose synthase 7-like (predicted) Solyc02g081300.2 69 96,2 98
3302 dihydroflavonol-4-reductase Solyc02g085020.2.1 S. Lycopersicum 24 25 35/5,4 42,7/6,0      
3401 1-aminocyclopropane-1-carboxylate oxidase homolog isoform 1 Solyc09g089580.2.1 S. Lycopersicum 71 38 40/5,5 40,9/5,6      
3601 ATP synthase subunit beta, chloroplastic Solyc01g007320.2.1 S. Lycopersicum 48 43 50/5,4 53,5/5,3      
3801 subtilisin-like protease SBT1.7 SBT1.7 A. thaliana 26 15 97/5,5 80,1/5,9 SBT1 protein precursor Solyc04g078110.1 64 78,6 97
4702 calcium-dependent protein kinase 18 CPK18 A. thaliana 48 22 64/5,6 60,4/8,7 calcium-dependent protein kinase Solyc03g033540.2 80 63,7 89
5303 ADP,ATP carrier protein 2, mitochondrial ANT-G2 T. aestivum 47 48 35/6,2 35,9/9,0 ADP/ATP translocator Solyc11g062130.1 88 41,9 98
5601 enolase Solyc09g009020.2.1 S. Lycopersicum 147 64 48/5,8 48,0/5,7      
6502 alcohol dehydrogenase 2 Solyc06g059740.2.1 S. Lycopersicum 31 34 42/6,4 41,7/6,0      
6606 CBL-interacting protein kinase 14 CIPK14 O. sativa 37 26 49/6,4 50,5/9,0 CBL-interacting protein kinase Solyc05g052270.1 60 49,7 100
6607 26S protease regulatory subunit 7 homolog A RPT1A A. thaliana 45 25 50/6,4 48,2/6,3 26S protease regulatory subunit 7 homolog A-like (predicted) Solyc06g063140.2 98 47,7 99
6701 phosphomethylpyrimidine synthase, chloroplastic THIC A. thaliana 69 30 70/6,4 72,6/6,0 phosphomethylpyrimidine synthase, chloroplastic (predicted) Solyc06g006080.2 83 72,5 99
7203 SufE-like protein 2, chloroplastic SUFE2 A. thaliana 26 23 28/6,5 29,1/9,0 sufE-like protein 2, chloroplastic isoform X2 (predicted) Solyc05g013710.2 50 29,9 91
7603 cytochrome P450 85A1 CYP85A1 A. thaliana 28 34 55/6,5 54,1/9,1 cytochrome P450 85A1 Solyc02g089160.2 70 53,5 96
7605 mannan endo-1,4-beta-mannosidase 3 Solyc12g013750.1 S. Lycopersicum 34 24 48/6,5 45,3/5,6      
7701 linoleate 9S-lipoxygenase B Solyc01g099190.2.1 S. Lycopersicum 74 22 60/6,4 97,5/5,6      
7702 argininosuccinate lyase, chloroplastic At5g10920 A. thaliana 28 23 60/6,4 57,9/5,6 argininosuccinate lyase Solyc04g076320.2 80 nd 89
7703 F-box/WD-40 repeat-containing protein At5g21040 At5g21040 A. thaliana 40 33 66/6,7 61,1/8,5 F-box/WD-40 repeat-containing protein At5g21040-like (predicted) Solyc06g073650.1 59 60,9 100
7704 zinc finger CCCH domain-containing protein 46 At3g51950 A. thaliana 29 23 60/6,5 60,2/6,5 zinc finger CCCH domain-containing protein 46-like isoform X2 (predicted) Solyc01g008600.2 46 61,9 79
7705 pentatricopeptide repeat-containing protein At1g15480, mitochondrial At1g15480 A. thaliana 29 17 66/6,4 67,8/6,4 pentatricopeptide repeat-containing protein At1g80270, mitochondrial (predicted) Solyc12g020050.1 77 70,1 59
8107 growth-regulating factor 10 GRF10 O. sativa 43 16 22/6,8 22,5/9,0 growth-regulating factor 9-like (predicted) Solyc08g079800.2 59 24,6 51
8205 40S ribosomal protein S3a-2 RPS3AB A. thaliana 29 35 28/6,7 29,9/9,7 40S ribosomal protein S3a (predicted) Solyc06g072490.2 84 29,6 92
8304 aldo-keto reductase family 4 member C11 AKR4C11 A. thaliana 37 18 35/6,6 35,2/6,5 aldo-keto reductase family 4 member C9 (predicted) Solyc00g015750.1 78 35,0 100
  1. Proteins abundance varied in response tothe As and/or As + Si treatments. Notes: a spot number assigned following 2DE separation, b putative protein identification, c encoding gene of the closest match in the Swiss-Prot database, d organism, e score, f percentage of coverage of the matching peptide sequence tags derived from MASCOT analysis, g estimated mass and pI, h predicted mass and pI of the closest match, i best BLAST hit in tomato, l gene name, m predicted mass, n % identity, o % coverage identified by BLASTp search of tomato