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Table 2 Putative cis-acting regulatory elements identified in the promoter of BpbHLH9 by PlantCARE databases

From: Cloning and expression of BpMYC4 and BpbHLH9 genes and the role of BpbHLH9 in triterpenoid synthesis in birch

Cis element Position Sequence Function of site
4 cl-CMA2b +699 TCTCACCAACC light-responsive element
5’UTR Py-rich stretch 444, −575, −577, −579, −581, +877, +881, +883, +885, +887, +889, +891, +893, +895, +897, +899, +901, +903, +905 TTTCTTCTCT, TTTCTCTCTCTCTC cis-acting element conferring high transcription levels
ABRE +146 CACGTG cis-acting element involved in abscisic acid response
ACE +147 ACGTGGA cis-acting element involved in light response
ARE −317, −665 TGGTTT cis-acting regulatory element essential for anaerobic induction
ATGCAAAT motif −352 ATACAAAT cis-acting regulatory element associated with the TGAGTCA motif
Box I +231 TTTCAAA light-responsive element
CAAT-box +122, +316, −267, −1039, −188, +644, +331, −1044, −187, +643, +275, +1043, +206, −750, −352, −1045 CAAT,
CAATT,
CAAAT,
common cis-acting element in promoter and enhancer regions
CCAAT-box −842 CAACGG MYBHv1 binding site
G-Box +146, −389 CACGTG, CACATGG cis-acting regulatory element involved in light response
GAG-motif −58, −879, −707 AGAGAGT part of a light-responsive element
GARE-motif −791 AAACAGA gibberellin-responsive element
GATA-motif +19 GATAGGG part of a light-responsive element
GCN4_motif −141, −516, −490 TGTGTCA element involved in endosperm expression
HSE +262 AGAAAATTCG cis-acting element involved in heat stress response
I-box +19 GATAGGG part of a light-responsive element
L-box +699 TCTCACCAACC part of a light-responsive element
LTR +102 CCGAAA cis-acting element involved in low-temperature response
MBS +605 CAACTG MYB binding site involved in drought-inducibility
Skn-1_motif −140, −489, +191 GTCAT cis-acting regulatory element required for endosperm expression
Sp1 +763 CC(G/A)CCC light-responsive element
GCN4_motif −141, −516, −490 TGTGTCA element involved in endosperm expression
TATA-box −80, −181, +239, +344,
−439, −571, −724, −732, −733, −734, −735, −830,
+852, +944, −946, −947, −956, −964, −990, −1058
CCTATAAATT, TTTTA, TATA, ATATAT,TAATA core promoter element around of transcription start
TC-rich repeats +397, +814 ATTTTCTTCA cis-acting element involved in defense and stress response
TCA-element +128, −785 CCATCTTTTT, CAGAAAAGGA cis-acting element involved in salicylic acid response
TCT-motif +775 TCTTAC part of a light-responsive element