BinName | FPKM | Cd1h/ck1h | Rice gene annotation | ||
---|---|---|---|---|---|
Transcript ID | ck1h | Cd1h | log2FC | q_value | |
Jasmonate synthesis-degradation and signaling | |||||
 Os06g11290.1△ | 5.18 | 435.09 | 6.39 | 0.0019 | 12-oxophytodienoate reductase, OsOPR1 |
 Os06g11210.1# | 58.99 | 717.03 | 3.60 | 0.0019 | OsOPR5 [Q69TI0] |
 Os06g11240.1 | 14.15 | 339.14 | 4.58 | 0.0019 | OPR |
 Os06g11200.1 | 0.15 | 2.40 | 3.98 | 0.0188 | OPR |
 Os03g55800.1∑ | 29.03 | 146.45 | 2.33 | 0.0019 | allene oxide synthase, AOS1 |
 Os03g12500.1∑ | 2.23 | 13.52 | 2.60 | 0.0019 | allene oxide synthase, AOS2 |
 Os12g05440.1* | 1.85 | 58.66 | 4.98 | 0.002 | cytochrome P450, CYP94C2b |
 Os03g08310.1* | 1.88 | 27.26 | 3.86 | 0.002 | ZIM domain containing protein, OsJAZ9 |
 Os03g28940.1△ | 38.17 | 106.38 | 1.48 | 0.0019 | ZIM domain containing protein |
 Os09g02710.1 | 0.63 | 4.20 | 2.73 | 0.0035 | Arabidopsis loss of the timing of Et and JA biosynthesis 1 |
Abscisic acid synthesis-degradation and signaling | |||||
 Os03g44380.1△ | 0.53 | 5.75 | 3.43 | 0.0019 | 9-cis-epoxycarotenoid dioxygenase, OsNCED3 |
 Os07g05940.1△ | 0.59 | 99.97 | 7.41 | 0.0019 | OsNCED4 |
 Os12g42280.1△ | 2.63 | 32.42 | 3.62 | 0.0019 | OsNCED5 |
 Os12g29400.1△ | 5.88 | 14.09 | 1.26 | 0.0019 | ABA-responsive protein [Q2QQY9] |
 Os04g44510.1 | 51.06 | 244.45 | 2.26 | 0.0019 | ABA-responsive protein (GRAM domain) |
 Os04g44500.1 | 17.60 | 49.88 | 1.50 | 0.0019 | ABA-responsive protein (GRAM domain) |
 Os10g04860.1 | 5.05 | 2.26 | −1.16 | 0.0019 | aldehyde oxidase |
 Os02g52780.2 | 0.71 | 14.01 | 4.30 | 0.0019 | OsbZIP23 |
Ethylene signaling | |||||
 Os07g48630.1△ | 52.93 | 109.98 | 1.06 | 0.002 | ethylene-insensitive 3 |
 Os02g43790.1△ | 41.57 | 265.23 | 2.67 | 0.002 | ethylene-responsive transcription factor, OsBIERF3 |
 Os03g09170.1△ | 20.44 | 218.22 | 3.42 | 0.002 | ERF |
 Os04g46220.1Ⓜ | 44.26 | 119.27 | 1.43 | 0.002 | ERF |
 Os08g31580.1 | 102.51 | 268.56 | 1.39 | 0.002 | ERF |
 Os01g54890.1 | 4.75 | 31.18 | 2.71 | 0.034 | ERF2 |
 Os01g58420.1 | 49.28 | 134.22 | 1.45 | 0.002 | OsERF3 |
 Os11g06770.2* | 0.10 | 0.70 | 2.75 | 0.027 | ERF110 |
 Os02g43970.1* | 2.93 | 7.61 | 1.37 | 0.002 | ABA-responsive DREB gene, ARAG1 |
 Os10g41330.2* | 5.79 | 64.06 | 3.47 | 0.002 | AP2 domain |
 Os06g10780.1* | 2.17 | 6.55 | 1.59 | 0.002 | AP2 domain |
 Os02g43940.1* | 1.74 | 6.56 | 1.92 | 0.002 | AP2 domain, OsDREB4–1 |
 Os09g28440.1 | 0.59 | 47.37 | 6.32 | 0.002 | AP2 domain, OsEATB |
 Os08g36920.1# | 0.76 | 70.32 | 6.53 | 0.002 | AP2 domain |
 Os03g08460.1Ⓜ | 91.75 | 42.47 | −1.11 | 0.002 | AP2 domain |
 Os03g08490.1 | 215.27 | 81.73 | −1.40 | 0.002 | AP2 domain |
 Os03g08500.1 | 538.17 | 256.44 | −1.07 | 0.002 | AP2 domain |
 Os04g08740.3 | 68.92 | 31.96 | −1.11 | 0.002 | ethylene receptor, OsETR2 [Q7XX84] |
Gibberellin synthesis-degradation | |||||
 Os06g37300.2 | 0.22 | 0.01 | −2.36 | 1.1290 | ent-kaurene oxidase 4, OsKO4 [Q0DBF4] |
 Os03g63970.1* | 18.68 | 0.00 | −1.12 | 40.5099 | gibberellin 20 oxidase 1 |
 Os05g48700.1 | 2.84 | 0.01 | 1.34 | 1.1252 | gibberellin 2-beta-dioxygenase |
Metal binding, chelation and storage | |||||
 Os04g57200.1△ | 54.50 | 169.43 | 1.64 | 0.002 | heavy metal transport/detoxification protein |
 Os04g57200.2 | 3.10 | 47.85 | 3.95 | 0.002 | |
 Os04g17100.1△ | 2.63 | 32.28 | 3.62 | 0.0063 | heavy metal-associated domain protein, HMAD HMAD |
 Os04g17100.2 | 43.72 | 123.38 | 1.50 | 0.0019 | |
 Os03g05750.1△ | 0.54 | 89.45 | 7.38 | 0.003 | HMAD |
 Os03g05750.2 | 9.01 | 212.68 | 4.56 | 0.002 | |
 Os02g37290.1△ | 38.65 | 132.69 | 1.78 | 0.002 | HMAD |
 Os02g37300.1△ | 11.63 | 66.20 | 2.51 | 0.002 | HMAD |
 Os02g37330.1△ | 3.99 | 98.49 | 4.63 | 0.002 | HMAD |
 Os04g39350.1△ | 4.57 | 33.87 | 2.89 | 0.002 | HMAD |
 Os04g39010.1 | 0.94 | 3.69 | 1.97 | 0.022 | HMAD |
 Os02g37320.1 | 2.57 | 19.20 | 2.90 | 0.002 | HMAD |
 Os02g37320.2 | 9.45 | 84.16 | 3.15 | 0.002 | |
 Os01g48710.1 | 116.94 | 46.15 | −1.34 | 0.002 | HMAD |
 Os03g64340.1* | 5.31 | 12.44 | 1.23 | 0.0050 | HMAD |
Divalent cations transporters | |||||
 Os08g10630.1△ | 19.33 | 6.55 | −1.56 | 0.0019 | ZRT/IRT-like protein, OsZIP4 [Q6ZJ91] |
 Os05g10940.1Ⓜ | 40.47 | 19.81 | −1.03 | 0.0019 | OsZIP7 [Q6L8F7] |
 Os05g39560.1 | 5.37 | 1.36 | −1.98 | 0.0113 | OsZIP5 [Q6L8G0] |
 Os05g39560.2 | 40.35 | 9.21 | −2.13 | 0.002 | |
 Os06g37010.1 | 5.56 | 2.13 | −1.39 | 0.0050 | OsZIP10 [Q5Z653] |
 Os05g39540.2* | 97.22 | 25.45 | −1.93 | 0.0019 | OsZIP9 [Q0DHE3] |
 Os03g46470.1* | 14.68 | 2.46 | −2.58 | 0.0076 | Iron-regulated transporter 1, OsIRT1 |
ABC transporters and pleiotropic drug resistance proteins | |||||
 Os01g42380.1# | 1.35 | 5.99 | 2.15 | 0.0019 | ABCG36/OsPDR9 , pleiotropic drug resistance protein |
 Os01g42410.1∑ | 3.66 | 21.96 | 2.59 | 0.0050 | ABCG37/OsPDR8 [Q8GU89] |
 Os02g11760.1△ | 0.34 | 2.90 | 3.10 | 0.0019 | ABCG39/OsPDR7 [Q8GU88] |
 Os01g42370.1 | 0.28 | 0.91 | 1.68 | 0.0019 | ABCG35/OsPDR11 [Q8GU92] |
 Os08g29570.1 | 0.32 | 8.42 | 4.72 | 0.0101 | ABCG44/OsPDR17 [Q6YW62] |
 Os08g29570.2 | 4.95 | 18.57 | 1.91 | 0.002 | |
 Os01g61940.1* | 10.43 | 25.90 | 1.31 | 0.0019 | ABC transporter family protein |
MATE family of citrate/H+ antiport transporters | |||||
 Os08g43654.1* | 1.05 | 2.52 | 1.26 | 0.026 | MATE efflux family protein |
 Os12g03260.1* | 1.50 | 4.33 | 1.53 | 0.047 | MATE |
 Os04g48290.1 | 3.72 | 8.19 | 1.14 | 0.002 | MATE |
 Os02g45380.1 | 1.23 | 8.37 | 2.76 | 0.002 | MATE |
other transporters | |||||
 Os12g25200.1Ⓜ | 123.93 | 50.25 | −1.30 | 0.002 | chloride transporter |
 Os02g36414.1 | 162.32 | 70.28 | −1.21 | 0.002 | transporter family protein |
 Os04g37970.1 | 118.36 | 43.01 | −1.46 | 0.002 | transporter family protein |
 Os07g24230.1 | 1.26 | 0.38 | −1.71 | 0.014 | integral membrane transporter family protein |
 Os01g14520.1 | 131.86 | 45.76 | −1.53 | 0.002 | dicarboxylate /malic acid transport protein |
 Os09g31130.1 | 1.58 | 7.13 | 2.17 | 0.035 | citrate transporter |
 Os10g30790.1△ | 26.30 | 94.24 | 1.84 | 0.046 | inorganic phosphate transporter, OsPT8 |
 Os10g30790.3* | 25.00 | 80.55 | 1.69 | 0.016 | |
Mitochondrial electron transport | |||||
 Os07g37730.1△ | 0.15 | 9.07 | 5.96 | 0.0035 | NADH-ubiquinone oxidoreductase |
 Os04g51150.1△ | 14.41 | 35.47 | 1.30 | 0.0019 | AOX1A, alternative oxidase |
 Os04g51160.1Ⓜ | 0.66 | 46.99 | 6.15 | 0.0019 | AOX1B |
 Os10g39870.1 | 10.79 | 29.33 | 1.44 | 0.0019 | Arabidopsis Transmembrane protein G1P-related 1 |
 Os05g09550.1 | 1.37 | 4.81 | 1.81 | 0.0482 | Der1-like family domain containing protein |
 Os02g37000.1* | 6.37 | 16.29 | 1.35 | 0.0019 | mitochondrial prohibitin complex protein 1 |
Heat-shock transcription factor (HSF) family | |||||
 Os09g35790.1* | 0.76 | 6.99 | 3.20 | 0.0168 | OsHsfB2c [Q652B0] |
 Os09g35790.2* | 9.03 | 26.10 | 1.53 | 0.0019 | |
 Os02g32590.1△ | 1.21 | 7.07 | 2.55 | 0.0019 | OsHsfA3 [Q6H6Q7] |
 Os02g32590.2 | 0.38 | 2.76 | 2.88 | 0.0218 | |
 Os04g48030.1△ | 3.05 | 14.05 | 2.20 | 0.0178 | OsHsfB2a [Q7XRX3] |
 Os10g28340.1 | 0.62 | 12.76 | 4.36 | 0.0019 | OsHsfA2c |
 Os10g28340.2 | 3.72 | 15.96 | 2.10 | 0.0135 | |
 Os03g12370.3 | 0.40 | 4.95 | 3.65 | 0.0101 | OsHsfA9 [Q10PR4] |
 Os08g43334.2 | 2.45 | 44.04 | 4.17 | 0.0019 | OsHsfB2b [Q6Z9C8] |
 Os02g13800.1 | 15.01 | 50.05 | 1.74 | 0.0019 | OsHsfC2a [Q6EUG4] |
NAC domain transcription factor family | |||||
 Os01g50360.1* | 2.52 | 1.09 | −1.21 | 0.026 | NAC domain containing protein |
 Os11g03300.2 | 16.07 | 38.93 | 1.28 | 0.002 | OsNAC10 |
 Os01g60020.1∑ | 5.77 | 25.25 | 2.13 | 0.002 | OsNAC4 |
 Os07g12340.1Ⓜ | 12.81 | 455.79 | 5.15 | 0.002 | OsNAC3 [Q7EZT1] |
 Os03g60080.1# | 88.35 | 942.97 | 3.42 | 0.002 | SNAC1 |
WRKY domain transcription factor family | |||||
 Os02g08440.1# | 2.03 | 125.38 | 5.95 | 0.0019 | WRKY71 |
 Os02g08440.4 | 24.26 | 179.27 | 2.89 | 0.0019 | |
 Os05g27730.1△ | 101.45 | 430.59 | 2.09 | 0.0019 | OsWRKY53 |
 Os01g61080.1△ | 6.51 | 92.36 | 3.83 | 0.0019 | OsWRKY24 |
 Os01g09100.1△ | 29.32 | 195.59 | 2.74 | 0.0019 | OsWRKY10 |
 Os05g50610.2 | 0.89 | 2.44 | 1.45 | 0.0317 | WRKY8 |
 Os08g13840.2 | 130.82 | 404.49 | 1.63 | 0.0019 | WRKY25 |
 Os05g09020.1 | 1.47 | 13.65 | 3.21 | 0.0019 | WRKY67 |
 Os05g09020.2 | 9.62 | 51.47 | 2.42 | 0.0019 | |
 Os11g29870.1 | 5.02 | 15.26 | 1.60 | 0.0019 | WRKY72 |
 Os09g25060.1 | 3.11 | 24.14 | 2.95 | 0.0019 | OsWRKY76 |
 Os01g60600.1* | 0.42 | 1.68 | 1.99 | 0.0323 | WRKY108 |