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Table 2 Splice variants of the bread wheat Csl genes

From: Genome-wide analysis of the cellulose synthase-like (Csl) gene family in bread wheat (Triticum aestivum L.)

Ensembl gene ID Gene name Predicted amino acids Spliced exon/introns Status
TRIAE_CS42_6BS_TGACv1_513375_AA1639370.1 TaCslA1_6BS 581 Wild type
TRIAE_CS42_6BS_TGACv1_513375_AA1639370.2   390 Exon 1 and 2 Exon skipping
TRIAE_CS42_6BS_TGACv1_513376_AA1639390.2 TaCslA4_6BS 528 Wild type
TRIAE_CS42_6BS_TGACv1_513376_AA1639390.1   393 Exon 1 and 2 Exon skipping
TRIAE_CS42_7AS_TGACv1_569190_AA1809650.1 TaCslA3_7AS 551 Wild type
TRIAE_CS42_7AS_TGACv1_569190_AA1809650.2   380 Exon 7, 8 and 9 Exon skipping
TRIAE_CS42_7AS_TGACv1_569190_AA1809650.3   503 Exon 9 Exon skipping
TRIAE_CS42_7DL_TGACv1_602617_AA1962870.2 TaCslA10_7DL 515 Wild type
TRIAE_CS42_7DL_TGACv1_602617_AA1962870.1   555 Intron 8 Intron retention
TRIAE_CS42_3DL_TGACv1_249033_AA0835410.2 TaCslA6_3DL 524 Wild type
TRIAE_CS42_3DL_TGACv1_249033_AA0835410.1   572 Intron 1 Intron retention
TRIAE_CS42_3B_TGACv1_221079_AA0729630.1 TaCslA6_3B 571 Wild type
TRIAE_CS42_3B_TGACv1_221079_AA0729630.2   538 Exon 2 Exon skipping
TRIAE_CS42_5BL_TGACv1_404820_AA1311790.1 TaCslC10_5BL 712 Wild type
TRIAE_CS42_5BL_TGACv1_404820_AA1311790.2   468 Exon 5 Alternative 5′ site
TRIAE_CS42_5BL_TGACv1_404820_AA1311790.3   504 Exon 1 Exon skipping
TRIAE_CS42_5DL_TGACv1_435778_AA1454840.1 TaCslC10_5DL 708 Wild type
TRIAE_CS42_5DL_TGACv1_435778_AA1454840.2   502 Exon1 Exon skipping
TRIAE_CS42_5AL_TGACv1_374268_AA1195590.3 TaCslC10_5AL 703 Wild type
TRIAE_CS42_5AL_TGACv1_374268_AA1195590.2   496 Exon 5 Alternative 5′ site
TRIAE_CS42_5AL_TGACv1_374268_AA1195590.1   501 Exon 5 Exon skipping
TRIAE_CS42_3DL_TGACv1_251593_AA0882850.1 TaCslC1_3DL 704 Wild type
TRIAE_CS42_3DL_TGACv1_251593_AA0882850.2   493 Exon 5 Exon skipping
TRIAE_CS42_3DL_TGACv1_251593_AA0882850.3   679 Exon 1 Alternative 3′ site
TRIAE_CS42_3AL_TGACv1_197197_AA0665370.1 TaCslC1_3AL 704 Wild type
TRIAE_CS42_3AL_TGACv1_197197_AA0665370.2   560 Exon 5 Alternative 3′ site
TRIAE_CS42_3AL_TGACv1_197197_AA0665370.3   679 Exon 5 Alternative 5′ site
TRIAE_CS42_6AL_TGACv1_471004_AA1500600.1 TaCslE2_6AL 667 Wild type
TRIAE_CS42_6AL_TGACv1_471004_AA1500600.2   737 Intron 8 Intron retention
TRIAE_CS42_6AL_TGACv1_471004_AA1500600.3   635 Exon 4 Alternative 5′ site
TRIAE_CS42_5DL_TGACv1_433536_AA1415830.1 TaCslE1_5DL 728 Wild type
TRIAE_CS42_5DL_TGACv1_433536_AA1415830.2   684 Exon 4 Exon skipping
TRIAE_CS42_5BL_TGACv1_406235_AA1342600.1 TaCslE1_5BL 734 Wild type
TRIAE_CS42_5BL_TGACv1_406235_AA1342600.2   728 Exon 1 Exon skipping
TRIAE_CS42_2DS_TGACv1_177641_AA0581710.1 TaCslF3_2DS 847 Wild type
TRIAE_CS42_2DS_TGACv1_177641_AA0581710.2   735 Exon 2 Alternative 3′ site
TRIAE_CS42_2DS_TGACv1_179076_AA0604160.1 TaCslF4_2DS 783 Wild type
TRIAE_CS42_2DS_TGACv1_179076_AA0604160.2   700 Exon 1 Exon skipping
TRIAE_CS42_2BS_TGACv1_147667_AA0486240.1 TaCslF9_2BS 877 Wild type
TRIAE_CS42_2BS_TGACv1_147667_AA0486240.2   796 Exon 1 Exon skipping
TRIAE_CS42_5BL_TGACv1_409916_AA1366600.1 TaCslF7_5BL 745 Wild type
TRIAE_CS42_5BL_TGACv1_409916_AA1366600.2   815 Intron 2 Intron retention
TRIAE_CS42_5AL_TGACv1_374191_AA1193100.1 TaCslF7_5AL 792 Wild type
TRIAE_CS42_5AL_TGACv1_374191_AA1193100.2   807 Intron 1 Intron retention
TRIAE_CS42_2AL_TGACv1_094351_AA0296300.1 TaCslH1_2AL 737 Wild type
TRIAE_CS42_2AL_TGACv1_094351_AA0296300.2   660 Exon 9 Exon skipping
TRIAE_CS42_2AL_TGACv1_094351_AA0296300.3   480 Exon 6, 7, 8 and 9 Exon skipping
TRIAE_CS42_3AS_TGACv1_210908_AA0681280.1 TaCslJ1_3AS 738 Wild type
TRIAE_CS42_3AS_TGACv1_210908_AA0681280.2   766 Intron 4 Intron retention
TRIAE_CS42_3DS_TGACv1_272756_AA0924850.2 TaCslJ2_3DS 609 Wild type
TRIAE_CS42_3DS_TGACv1_272756_AA0924850.1   734 Intron 1 Intron retention