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Table 1 Read mapping, alignment and subsequent expression summary for RIL165 and RIL387

From: RNA-Seq analysis of resistant and susceptible sub-tropical maize lines reveals a role for kauralexins in resistance to grey leaf spot disease, caused by Cercospora zeina

Samplea Number of quality filtered reads Number of mapped readsb Number of paired alignments Maximum FPKMc Number of expressed genes
RIL165_1 70,769,770 83% 27,884,716 5761 22,558
RIL165_2 62,302,258 75% 21,984,219 6882 22,895
RIL165_3 78,883,890 76% 28,417,469 4868 22,773
RIL387_1 62,399,266 80% 23,331,358 6755 22,633
RIL387_2 63,798,694 78% 23,458,704 8659 22,575
RIL387_3 59,304,854 80% 22,353,073 6349 22,641
  1. aSamples are numbered per biological replicate
  2. bSequence reads for each biological replicate were mapped to v2 of the B73 reference genome using TopHat v2.0.9 [103]
  3. cCufflinks v2.0.2 was used to calculate transcript abundance which is reported as fragments per kilobase pair of exon model per million fragments mapped (FPKM) [33]