Table 2 Composition of identified 5S rDNA-tagged genomic fragments in pools of BAC-clones 52 and 89. The TE element descriptions are given according to the Triticeae repeat sequence database (TREP) classification [64]
From: Fine organization of genomic regions tagged to the 5S rDNA locus of the bread wheat 5B chromosome
Length, bp | TE composition (length, bp) | 5S rDNA | |
|---|---|---|---|
Pool_52 | |||
5S rDNA Fragment 1 | 10,801 | RLG_Laura, 5895 bp | 1 hit, 227 bp |
5S rDNA Fragment 2 | 52,840 | RLG_Danae, 15,807 bp RLG_Fatima, 9148 bp DTC_Jorge, 10,482 bp RLG_WHAM, 4974 bp Unnamed_DTC, 1589 bp RLX_Ginger, 4510 bp DTM_Deimos, 399 bp RLG_Egug, 602 bp DTM_Sherlock, 1917 bp RLG_Laura, 1000 bp | 1 hit, 363 bp |
5S rDNA Fragment 3 | 39,574 | RLG_Fatima, 8699 bp RLG_Laura, 11,838 bp RLX_Xalax, 13,537 bp | 4 hits, 1924 bp |
5S rDNA Fragment 4 | 30,284 | RLG_Wilma, 7007 bp RLG_Sabrina, 6998 bp RIX, unnamed, 1251 bp RLG_Fatima, 2084 bp RLG_Daniela, 9838 bp | 1 hit, 1429 bp |
5S rDNA Fragment 5 | 4415 | RLG_Fatima, 2771 bp DTC_Jorge, 1477 bp | 1 hits, 162 bp |
Pool_89 | |||
5S rDNA Fragment 6 | 2503 | RLG_Nusif, 2411 bp | 1 hit, 92 bp |