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Table 5 QTL detected (Type I error rate of 1% at the genomewide level) for Black Stem disease (BS) and Premature Ripening (PR) disease resistance in XRQxPSC8 and FUxPAZ2 RIL populations

From: Different genetic architectures underlie crop responses to the same pathogen: the {Helianthus annuus * Phoma macdonaldii} interaction case for black stem disease and premature ripening

Disease RIL Trait LG position min max R2 MCQTL test LOD P1-P2 contrast:value unit
BS XRQ-PSC8 Pm_BS_dpi14 5 78.8 64.8 99.1 18.3 4.99 4.71 0.10 score unit
Pm_BS_dpi21 5 90.8 48.5 97.1 18.8 5.01 4.74 0.12 score unit
Pm_BS_dpi21 10 89.7 66.1 98.2 15.7 4.19 3.80 −0.10 score unit
Pm_BS_dpi42 5 69.1 67.7 89.5 19.7 5.29 5.07 0.14 score unit
Pm_BS_dpi42 10 59.3 28.8 88.5 15.6 4.21 3.82 −0.14 score unit
Pm_BS_dpi49 15 47.8 44.0 70.5 16.9 4.58 4.23 0.14 score unit
Pm_BS_dpi56 15 48.4 45.6 69.3 19.9 5.37 5.16 0.15 score unit
Pm_BS_dpi63 15 48.4 45.4 70.1 19.3 5.22 4.98 0.14 score unit
AUDPC_BS 15 48.4 46.1 70.0 19.6 4.83 4.52 6,10 score unit.day
FU-PAZ2 Pm_BS_dpi28 6 37.7 26.4 52.4 16.8 4.4 4.01 −0.06 score unit
AUDPC_BS 6 37.7 25.5 54.2 17.7 4.3 3.93 −3,70 score unit.day
PR XRQ-PSC8 Pm_PR_dpi14 10 75.3 69.9 91.4 21.0 5.65 5.51 −0.09 score unit
Pm_PR_dpi14 16 79.4 76.9 94.9 28.8 7.85 8.36 0.10 score unit
Pm_PR_dpi21 10 75.3 65.2 91.5 19.1 5.13 4.88 −0.06 score unit
Pm_PR_dpi42 10 43.7 39.6 48.4 22.2 6.00 5.94 −0.22 score unit
Pm_PR_dpi49 10 43.7 39.3 47.4 26.9 7.35 7.68 −0.36 score unit
Pm_PR_dpi56 10 41.7 37.9 45.0 24.0 6.51 6.58 −0.32 score unit
Pm_PR_dpi63 10 41.7 37.0 59.1 16.0 4.37 4.00 −0.21 score unit
AUDPC_PR 10 43.7 38.9 51.1 23.9 6.48 6.53 −3.32 % PR plants.day
FU-PAZ2 Pm_PR_dpi21 13 112.9 102.4 113.0 17.1 4.5 4.12 −0.13 score unit
Pm_PR_dpi28 13 112.9 0.0 113.0 16.8 4.4 4.02 −0.15 score unit
Pm_PR_dpi35 13 103.6 100.8 113.0 24.8 6.2 6.22 −0.13 score unit
Pm_PR_dpi42 7 42.5 36.7 46.7 25.0 6.2 6.22 0.27 score unit
Pm_PR_dpi49 7 42.5 38.0 46.0 39.4 10.2 12.12 0.42 score unit
Pm_PR_dpi56 7 42.5 38.0 46.4 33.0 8.3 9.20 0.33 score unit
AUDPC_PR 7 41.9 37.1 46.3 32.4 8.0 8.72 2.60 % PR plants.day
Alternaria XRQ-PSC8 Alternaria 10 43.7 42.9 44.0 52.8 16.29 22.85 −0.70 score unit
  1. Pm: Phoma macdonaldii; P1-P2: XRQ-PSC8 or FU-PAZ2
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