Table 5 QTL detected (Type I error rate of 1% at the genomewide level) for Black Stem disease (BS) and Premature Ripening (PR) disease resistance in XRQxPSC8 and FUxPAZ2 RIL populations
Disease | RIL | Trait | LG | position | min | max | R2 | MCQTL test | LOD | P1-P2 contrast:value | unit |
|---|---|---|---|---|---|---|---|---|---|---|---|
BS | XRQ-PSC8 | Pm_BS_dpi14 | 5 | 78.8 | 64.8 | 99.1 | 18.3 | 4.99 | 4.71 | 0.10 | score unit |
Pm_BS_dpi21 | 5 | 90.8 | 48.5 | 97.1 | 18.8 | 5.01 | 4.74 | 0.12 | score unit | ||
Pm_BS_dpi21 | 10 | 89.7 | 66.1 | 98.2 | 15.7 | 4.19 | 3.80 | −0.10 | score unit | ||
Pm_BS_dpi42 | 5 | 69.1 | 67.7 | 89.5 | 19.7 | 5.29 | 5.07 | 0.14 | score unit | ||
Pm_BS_dpi42 | 10 | 59.3 | 28.8 | 88.5 | 15.6 | 4.21 | 3.82 | −0.14 | score unit | ||
Pm_BS_dpi49 | 15 | 47.8 | 44.0 | 70.5 | 16.9 | 4.58 | 4.23 | 0.14 | score unit | ||
Pm_BS_dpi56 | 15 | 48.4 | 45.6 | 69.3 | 19.9 | 5.37 | 5.16 | 0.15 | score unit | ||
Pm_BS_dpi63 | 15 | 48.4 | 45.4 | 70.1 | 19.3 | 5.22 | 4.98 | 0.14 | score unit | ||
AUDPC_BS | 15 | 48.4 | 46.1 | 70.0 | 19.6 | 4.83 | 4.52 | 6,10 | score unit.day | ||
FU-PAZ2 | Pm_BS_dpi28 | 6 | 37.7 | 26.4 | 52.4 | 16.8 | 4.4 | 4.01 | −0.06 | score unit | |
AUDPC_BS | 6 | 37.7 | 25.5 | 54.2 | 17.7 | 4.3 | 3.93 | −3,70 | score unit.day | ||
PR | XRQ-PSC8 | Pm_PR_dpi14 | 10 | 75.3 | 69.9 | 91.4 | 21.0 | 5.65 | 5.51 | −0.09 | score unit |
Pm_PR_dpi14 | 16 | 79.4 | 76.9 | 94.9 | 28.8 | 7.85 | 8.36 | 0.10 | score unit | ||
Pm_PR_dpi21 | 10 | 75.3 | 65.2 | 91.5 | 19.1 | 5.13 | 4.88 | −0.06 | score unit | ||
Pm_PR_dpi42 | 10 | 43.7 | 39.6 | 48.4 | 22.2 | 6.00 | 5.94 | −0.22 | score unit | ||
Pm_PR_dpi49 | 10 | 43.7 | 39.3 | 47.4 | 26.9 | 7.35 | 7.68 | −0.36 | score unit | ||
Pm_PR_dpi56 | 10 | 41.7 | 37.9 | 45.0 | 24.0 | 6.51 | 6.58 | −0.32 | score unit | ||
Pm_PR_dpi63 | 10 | 41.7 | 37.0 | 59.1 | 16.0 | 4.37 | 4.00 | −0.21 | score unit | ||
AUDPC_PR | 10 | 43.7 | 38.9 | 51.1 | 23.9 | 6.48 | 6.53 | −3.32 | % PR plants.day | ||
FU-PAZ2 | Pm_PR_dpi21 | 13 | 112.9 | 102.4 | 113.0 | 17.1 | 4.5 | 4.12 | −0.13 | score unit | |
Pm_PR_dpi28 | 13 | 112.9 | 0.0 | 113.0 | 16.8 | 4.4 | 4.02 | −0.15 | score unit | ||
Pm_PR_dpi35 | 13 | 103.6 | 100.8 | 113.0 | 24.8 | 6.2 | 6.22 | −0.13 | score unit | ||
Pm_PR_dpi42 | 7 | 42.5 | 36.7 | 46.7 | 25.0 | 6.2 | 6.22 | 0.27 | score unit | ||
Pm_PR_dpi49 | 7 | 42.5 | 38.0 | 46.0 | 39.4 | 10.2 | 12.12 | 0.42 | score unit | ||
Pm_PR_dpi56 | 7 | 42.5 | 38.0 | 46.4 | 33.0 | 8.3 | 9.20 | 0.33 | score unit | ||
AUDPC_PR | 7 | 41.9 | 37.1 | 46.3 | 32.4 | 8.0 | 8.72 | 2.60 | % PR plants.day | ||
Alternaria | XRQ-PSC8 | Alternaria | 10 | 43.7 | 42.9 | 44.0 | 52.8 | 16.29 | 22.85 | −0.70 | score unit |