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Table 2 Genes with duplicates in subgenome 1 and 2 differentially expressed in one genotype

From: Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription

DE Class

DE Paralog pairsa

Homeolog1 DE

Homeolog2 DE

Both homeologs DE

rpd1/rmr6 Up

64

21

40

3

rpd1/rmr6 Down

111

61

43

7

  1. Contribution of genes with duplicates in both subgenomes on differential expression of paralogs (aDE paralog pairs identified based on at least one paralog being differentially expressed)