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Fig. 5 | BMC Plant Biology

Fig. 5

From: Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription

Fig. 5

Genome browser view of RNA-Seq reads mapped at rpd1/rmr6 misregulated transcription factors. Genome browser (IGV - Integrative Genomics Viewer; http://software.broadinstitute.org/software/igv/) views of B73 (red) and rpd1/rmr6–1 mutant (blue) RNA-Seq reads (normalized to the total of mapped reads) over the ZmMADS4 (a) and LG2 (b) transcription factors. Total mapped reads (replicates 1 and 2) and strand-specific mapped reads (replicate 2) are reported. Repeats depicted in (a) are only a small part of the more than thirty TEs annotated in the long central intron

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