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Table 1 bZIP transcription factor probesets and the respective co-expressed gene clusters of maturing seeds in AC Domain and RL4452a

From: Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.)

Probeset ID

AC Domain

RL4452

Arabidopsis

Aem

Aen

Amn

Rem

Ren

Rmn

AGI ID

E-Value

Gene name

Ta.808.1.S1_at

Aem16

Aen14

Amn4

Rem13

Ren9

Rmn1

AT5G06950.4

1E-104

AHBP-1B

Ta.161.1.S1_at

Aem1

Aen4

Amn12

Rem1

Ren2

Rmn13

AT2G35530.1

6E-72

bZIP transcription factor family protein

Ta.10054.1.S1_at

Aem10

Aen9

Amn10

Rem12

Ren15

Rmn10

AT2G36270.1

8E-55

ABI5 (ABA INSENSITIVE 5)

Ta.23671.1.S1_x_at

Aem10

Aen10

Amn16

Rem12

Ren12

Rmn15

AT2G36270.1

1E-44

ABI5 (ABA INSENSITIVE 5)

Ta.29331.1.S1_a_at

Aem1

Aen2

Amn12

Rem1

Ren2

Rmn8

AT3G56850.1

8E-29

AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)

Ta.29331.1.S1_at

Aem1

Aen2

Amn1

Rem1

Ren16

Rmn1

AT3G56850.1

8E-29

AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)

Ta.5410.1.S1_at

Aem15

Aen8

Amn10

Rem12

Ren15

Rmn10

AT5G06950.4

1E-135

AHBP-1B

Ta.1612.1.S1_at

Aem1

Aen14

Amn1

Rem7

Ren7

Rmn3

AT2G35530.1

2E-68

bZIP transcription factor family protein

Ta.23670.1.A1_at

NAb

NA

NA

NA

NA

NA

AT5G06950.4

1E-133

AHBP-1B

Ta.4604.1.S1_at

Aem1

Aen13

Amn1

Rem1

Ren6

Rmn1

AT1G06850.1

3E-47

AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)

Ta.6518.1.S1_at

Aem1

Aen14

Amn6

Rem1

Ren17

Rmn7

AT4G38900.3

2E-80

bZIP protein

TaAffx.24695.1.S1_at

Aem15

Aen2

Amn7

Rem6

Ren3

Rmn8

AT5G24800.1

5E-35

BZIP9 (BASIC LEUCINE ZIPPER 9)

TaAffx.88821.1.S1_at

Aem15

Aen9

Amn13

Rem13

Ren13

Rmn11

AT5G06950.4

1E-101

AHBP-1B

Ta.100.1.S1_at

Aem10

Aen10

Amn5

Rem9

Ren12

Rmn4

AT4G36730.1

1E-35

GBF1

Ta.13267.1.S1_at

NA

NA

NA

Rem10

NA

Rmn5

AT4G35040.1

1E-43

bZIP transcription factor family protein

Ta.13357.2.S1_at

Aem6

Aen1

Amn2

Rem5

Ren16

Rmn2

AT2G46270.1

6E-48

GBF3 (G-BOX BINDING FACTOR 3)

Ta.140.1.S1_at

Aem5

Aen11

Amn16

Rem5

Ren7

Rmn14

AT4G36730.1

3E-27

GBF1

Ta.19597.1.S1_at

Aem14

Aen8

Amn16

Rem12

Ren9

Rmn10

AT1G45249.1

1E-35

ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)

Ta.19597.1.S1_x_at

Aem14

Aen10

Amn10

Rem14

Ren18

Rmn12

AT1G45249.1

1E-35

ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)

Ta.23670.1.S1_at

Aem1

NA

Amn6

Rem1

NA

Rmn1

AT5G06950.4

1E-133

AHBP-1B

Ta.25454.1.S1_at

Aem1

NA

Amn1

Rem2

NA

Rmn2

AT2G42380.2

1E-49

bZIP transcription factor family protein

Ta.28910.1.S1_s_at

Aem3

Aen4

Amn2

Rem7

Ren6

Rmn3

AT2G35530.1

2E-64

bZIP transcription factor family protein

Ta.6443.2.S1_at

Aem8

Aen12

Amn3

Rem7

Ren13

Rmn15

AT2G40950.1

7E-62

BZIP17

Ta.6919.1.S1_at

Aem11

Aen9

Amn13

Rem9

Ren13

Rmn4

AT1G58110.2

6E-60

bZIP family transcription factor

Ta.893.1.S1_at

NA

Aen2

Amn8

NA

Ren3

Rmn8

AT5G28770.1

1E-30

BZO2H3

  1. aThe amino acid sequences of the wheat transcription factors available in the Plant Transcription Factor database (PlantTFDB 3.0) were searched against the wheat microarray platform in the Plant Expression Database (PLEXdb) to identify the respective probeset (<e−100)
  2. b NA not expressed in either or both tissues as determined by MAS5.0. Bold italicized clusters represent clusters enriched with ABRE motifs