TY - JOUR AU - Dominguez, F. AU - Cejudo, F. J. PY - 2014 DA - 2014// TI - Programmed cell death (PCD): an essential process of cereal seed development and germination JO - Front Plant Sci VL - 5 ID - Dominguez2014 ER - TY - JOUR AU - Sabelli, P. A. AU - Larkins, B. A. PY - 2009 DA - 2009// TI - The development of endosperm in grasses JO - Plant Physiol VL - 149 UR - https://doi.org/10.1104/pp.108.129437 DO - 10.1104/pp.108.129437 ID - Sabelli2009 ER - TY - BOOK AU - Bewley, J. D. AU - Bradford, K. AU - Hilhorst, H. AU - Nonogaki, H. PY - 2013 DA - 2013// TI - Seeds: physiology of development, germination and dormancy PB - Springer-Verlag CY - New York UR - https://doi.org/10.1007/978-1-4614-4693-4 DO - 10.1007/978-1-4614-4693-4 ID - Bewley2013 ER - TY - JOUR AU - Evers, T. AU - Millar, S. PY - 2002 DA - 2002// TI - Cereal grain structure and development: some implications for quality JO - J Cereal Sci VL - 36 UR - https://doi.org/10.1006/jcrs.2002.0435 DO - 10.1006/jcrs.2002.0435 ID - Evers2002 ER - TY - STD TI - Wheat: The big picture. Available: http://www.cerealsdb.uk.net/cerealgenomics/WheatBP/Documents/DOC_WheatBP.php. Accessed 20 Mar 2016. UR - http://www.cerealsdb.uk.net/cerealgenomics/WheatBP/Documents/DOC_WheatBP.php ID - ref5 ER - TY - JOUR AU - Belmonte, M. F. AU - Kirkbride, R. C. AU - Stone, S. L. PY - 2013 DA - 2013// TI - Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed JO - Proc Natl Acad Sci U S A VL - 110 UR - https://doi.org/10.1073/pnas.1222061110 DO - 10.1073/pnas.1222061110 ID - Belmonte2013 ER - TY - JOUR AU - Le, B. H. AU - Cheng, C. AU - Bui, A. Q. PY - 2010 DA - 2010// TI - Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors JO - Proc Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.1003530107 DO - 10.1073/pnas.1003530107 ID - Le2010 ER - TY - JOUR AU - Chen, J. AU - Zeng, B. AU - Zhang, M. AU - Xie, S. AU - Wang, G. AU - Hauck, A. AU - Lai, J. PY - 2014 DA - 2014// TI - Dynamic transcriptome landscape of maize embryo and endosperm development JO - Plant Physiol VL - 166 UR - https://doi.org/10.1104/pp.114.240689 DO - 10.1104/pp.114.240689 ID - Chen2014 ER - TY - JOUR AU - Sreenivasulu, N. AU - Radchuk, V. AU - Strickert, M. AU - Miersch, O. AU - Weschke, W. AU - Wobus, U. PY - 2006 DA - 2006// TI - Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA- regulated maturation in developing barley seeds JO - Plant J VL - 47 UR - https://doi.org/10.1111/j.1365-313X.2006.02789.x DO - 10.1111/j.1365-313X.2006.02789.x ID - Sreenivasulu2006 ER - TY - JOUR AU - Xue, L. J. AU - Zhang, J. J. AU - Xue, H. W. PY - 2012 DA - 2012// TI - Genome-wide analysis of the complex transcriptional networks of rice developing seeds JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0031081 DO - 10.1371/journal.pone.0031081 ID - Xue2012 ER - TY - JOUR AU - Gillies, S. A. AU - Futardo, A. AU - Henry, R. J. PY - 2012 DA - 2012// TI - Gene expression in the developing aleurone and starchy endosperm of wheat JO - Plant Biotechnol J VL - 10 UR - https://doi.org/10.1111/j.1467-7652.2012.00705.x DO - 10.1111/j.1467-7652.2012.00705.x ID - Gillies2012 ER - TY - JOUR AU - Pfeifer, M. AU - Kugler, K. G. AU - Sandve, S. R. AU - Zhan, B. AU - Rudi, H. AU - Hvidsten, T. R. AU - Mayer, K. F. AU - Olsen, O. A. PY - 2014 DA - 2014// TI - Genome interplay in the grain transcriptome of hexaploid bread wheat JO - Science VL - 345 UR - https://doi.org/10.1126/science.1250091 DO - 10.1126/science.1250091 ID - Pfeifer2014 ER - TY - JOUR AU - Wan, Y. AU - Poole, R. L. AU - Huttly, A. K. PY - 2008 DA - 2008// TI - Transcriptome analysis of grain development in hexaploid wheat JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-121 DO - 10.1186/1471-2164-9-121 ID - Wan2008 ER - TY - JOUR AU - Gao, F. AU - Ayele, B. T. PY - 2014 DA - 2014// TI - Functional genomics of seed dormancy and preharvest sprouting in wheat: advances and prospects JO - Front Plant Sci VL - 5 ID - Gao2014 ER - TY - JOUR AU - Cabral, A. L. AU - Jordan, M. C. AU - McCartney, C. A. AU - You, F. M. AU - Humphreys, D. G. AU - MacLachlan, R. AU - Pozniak, C. J. PY - 2014 DA - 2014// TI - Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L) JO - BMC Plant Biol VL - 14 UR - https://doi.org/10.1186/s12870-014-0340-1 DO - 10.1186/s12870-014-0340-1 ID - Cabral2014 ER - TY - JOUR AU - Rasul, G. AU - Humphreys, D. G. AU - Brûlé-Babel, A. L. AU - McCartney, C. A. AU - Knox, R. E. AU - DePauw, R. M. AU - Somers, D. J. PY - 2009 DA - 2009// TI - Mapping QTLs for pre-harvest sprouting traits in the spring wheat cross ‘RL4452/AC domain’ JO - Euphytica VL - 168 UR - https://doi.org/10.1007/s10681-009-9934-3 DO - 10.1007/s10681-009-9934-3 ID - Rasul2009 ER - TY - STD TI - Mukherjee S, Liu A, Deol KK, Kulichikhin K, Stasolla C, Brule-Babel A, Ayele BT. Transcriptional coordination and abscisic acid mediated regulation of sucrose transport and sucrose-to-starch metabolism related genes during grain filling in wheat (Triticum aestivum L.). Plant Sci. 2015;240:143–160. ID - ref17 ER - TY - STD TI - Gao F, Rampitsch C, Chitnis VR, Humphreys GC, Jordan MC, Ayele BT. Integrated analysis of seed proteome and mRNA oxidation reveals distinct post-transcriptional features regulating dormancy in wheat (Triticum aestivum L.). Plant Biotechnol J. 2013;11:921–932. ID - ref18 ER - TY - STD TI - Son S, Chitnis VR, Liu A, Gao F, Nguyen TN, Ayele BT. Abscisic acid metabolic genes of wheat (Triticum aestivum L.): identification and insights into their functionality in seed dormancy and dehydration tolerance. Planta. 2016;244:429–447. ID - ref19 ER - TY - JOUR AU - Barrero, J. M. AU - Jacobsen, J. V. AU - Talbot, M. J. AU - White, R. G. AU - Swain, S. M. AU - Garvin, D. F. AU - Gubler, F. PY - 2012 DA - 2012// TI - Grain dormancy and light quality effects on germination in the model grass Brachypodium distachyon JO - New Phytol VL - 193 UR - https://doi.org/10.1111/j.1469-8137.2011.03938.x DO - 10.1111/j.1469-8137.2011.03938.x ID - Barrero2012 ER - TY - JOUR AU - Meimoun, P. AU - Mordret, E. AU - Langlade, N. B. AU - Balzergue, S. AU - Arribat, C. AU - Bailly, S. AU - El-Maarouf-Bouteau, H. PY - 2014 DA - 2014// TI - Is gene transcription involved in seed dry after-ripening JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0086442 DO - 10.1371/journal.pone.0086442 ID - Meimoun2014 ER - TY - CHAP AU - Vertucci, C. W. AU - Farrant, J. M. ED - Kigel, J. ED - Galili, G. PY - 1995 DA - 1995// TI - Acquisition and loss of desiccation tolerance BT - Seed development and germination PB - Marcel Dekker CY - New York ID - Vertucci1995 ER - TY - JOUR AU - Raynaud, C. AU - Mallory, A. C. AU - Latrasse, D. AU - Jegu, T. AU - Bruggeman, Q. AU - Delarue, M. AU - Bergounioux, C. AU - Benhamed, M. PY - 2014 DA - 2014// TI - Chromatin meets the cell cycle JO - J Exp Bot VL - 65 UR - https://doi.org/10.1093/jxb/ert433 DO - 10.1093/jxb/ert433 ID - Raynaud2014 ER - TY - JOUR AU - Smart, M. G. AU - O’Brien, T. P. PY - 1983 DA - 1983// TI - The development of the wheat embryo in relation to the neighbouring tissues JO - Protoplasma VL - 114 UR - https://doi.org/10.1007/BF01279863 DO - 10.1007/BF01279863 ID - Smart1983 ER - TY - JOUR AU - Huang, C. K. AU - Shen, Y. L. AU - Huang, L. F. AU - Wu, S. J. AU - Yeh, C. H. AU - Lu, C. A. PY - 2016 DA - 2016// TI - The DEAD-box RNA helicase AtRH7/PRH75 participates in pre-rRNA processing, plant development and cold tolerance in Arabidopsis JO - Plant Cell Physiol VL - 57 UR - https://doi.org/10.1093/pcp/pcv188 DO - 10.1093/pcp/pcv188 ID - Huang2016 ER - TY - JOUR AU - Zhu, M. AU - Chen, G. AU - Dong, T. AU - Wang, L. AU - Zhang, J. AU - Zhao, Z. AU - Hu, Z. PY - 2015 DA - 2015// TI - SlDEAD31, a putative DEAD-box RNA helicase gene, regulates salt and drought tolerance and stress-related genes in tomato JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0133849 DO - 10.1371/journal.pone.0133849 ID - Zhu2015 ER - TY - JOUR AU - Hsu, Y. F. AU - Chen, Y. C. AU - Hsiao, Y. C. AU - Wang, B. J. AU - Lin, S. Y. AU - Cheng, W. H. AU - Jauh, G. Y. AU - Harada, J. J. AU - Wang, C. S. PY - 2014 DA - 2014// TI - AtRH57, A DEAD-box RNA helicase, is involved in feedback inhibition of glucose-mediated abscisic acid accumulation during seedling development and additively affects pre-ribosomal RNA processing with high glucose JO - Plant J VL - 77 UR - https://doi.org/10.1111/tpj.12371 DO - 10.1111/tpj.12371 ID - Hsu2014 ER - TY - JOUR AU - Dever, T. E. PY - 2002 DA - 2002// TI - Gene-specific regulation by general translation factors JO - Cell VL - 108 UR - https://doi.org/10.1016/S0092-8674(02)00642-6 DO - 10.1016/S0092-8674(02)00642-6 ID - Dever2002 ER - TY - JOUR AU - Mata, J. AU - Marguerat, S. AU - Bahler, J. PY - 2005 DA - 2005// TI - Post-transcriptional control of gene expression: a genome-wide perspective JO - Trends Biochem Sci VL - 30 UR - https://doi.org/10.1016/j.tibs.2005.07.005 DO - 10.1016/j.tibs.2005.07.005 ID - Mata2005 ER - TY - JOUR AU - Rajjou, L. AU - Gallardo, K. AU - Debeaujon, I. AU - Vandekerckhove, J. AU - Job, C. AU - Job, D. PY - 2004 DA - 2004// TI - The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination JO - Plant Physiol VL - 134 UR - https://doi.org/10.1104/pp.103.036293 DO - 10.1104/pp.103.036293 ID - Rajjou2004 ER - TY - JOUR AU - An, Y. Q. AU - Lin, L. PY - 2011 DA - 2011// TI - Transcriptional regulatory programs underlying barley germination and regulatory functions of gibberellin and abscisic acid JO - BMC Plant Biol VL - 11 UR - https://doi.org/10.1186/1471-2229-11-105 DO - 10.1186/1471-2229-11-105 ID - An2011 ER - TY - JOUR AU - Radchuck, V. AU - Borisjuk, L. PY - 2014 DA - 2014// TI - Physical, metabolic and developmental functions of the seed coat JO - Front Plant Sci VL - 5 ID - Radchuck2014 ER - TY - JOUR AU - Sreenivasulu, N. AU - Usadel, B. AU - Winter, A. PY - 2008 DA - 2008// TI - Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools JO - Plant Physiol VL - 146 UR - https://doi.org/10.1104/pp.107.111781 DO - 10.1104/pp.107.111781 ID - Sreenivasulu2008 ER - TY - STD TI - Gao F, Jordan MC, Ayele BT. Transcriptional programs regulating seed dormancy and its release by after-ripening in common wheat (Triticum aestivum L.). Plant Biotechnol J. 2012;10:465–476. ID - ref34 ER - TY - CHAP AU - Alpert, P. AU - Oliver, M. J. ED - Black, M. ED - Pritchard, H. M. PY - 2002 DA - 2002// TI - Drying without dying BT - Desiccation and survival in plants: drying without dying PB - CABI Publishing CY - Wallingford UR - https://doi.org/10.1079/9780851995342.0003 DO - 10.1079/9780851995342.0003 ID - Alpert2002 ER - TY - JOUR AU - Kang, G. AU - Liu, G. AU - Peng, X. AU - Wei, L. AU - Wang, C. AU - Zhu, Y. AU - Ma, Y. AU - Jiang, Y. AU - Guo, T. PY - 2013 DA - 2013// TI - Increasing the starch content and grain weight of common wheat by overexpression of the cytosolic AGPase large subunit gene JO - Plant Physiol Biochem VL - 73 UR - https://doi.org/10.1016/j.plaphy.2013.09.003 DO - 10.1016/j.plaphy.2013.09.003 ID - Kang2013 ER - TY - JOUR AU - Ahmadi, A. AU - Baker, D. A. PY - 1999 DA - 1999// TI - Effects of abscisic acid (ABA) on grain filling processes in wheat JO - Plant Growth Regul VL - 28 UR - https://doi.org/10.1023/A:1006223925694 DO - 10.1023/A:1006223925694 ID - Ahmadi1999 ER - TY - JOUR AU - Morris, R. T. AU - O'Connor, T. R. AU - Wyrick, J. J. PY - 2008 DA - 2008// TI - Osiris: an integrated promoter database for Oryza sativa L JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn537 DO - 10.1093/bioinformatics/btn537 ID - Morris2008 ER - TY - JOUR AU - Carles, C. AU - Bies-Etheve, N. AU - Aspart, L. AU - Leon-Kloosterziel, K. M. AU - Koornneef, M. AU - Echeverria, M. AU - Delseny, M. PY - 2002 DA - 2002// TI - Regulation of Arabidopsis thaliana Em genes: role of ABI5 JO - Plant J VL - 30 UR - https://doi.org/10.1046/j.1365-313X.2002.01295.x DO - 10.1046/j.1365-313X.2002.01295.x ID - Carles2002 ER - TY - JOUR AU - Yang, X. AU - Yang, Y. N. AU - Xue, L. J. AU - Zou, M. J. AU - Liu, J. Y. AU - Chen, F. AU - Xue, H. W. PY - 2011 DA - 2011// TI - Rice ABI5-like1 regulates ABA and auxin responses by affecting the expression of ABRE-containing genes JO - Plant Physiol VL - 156 UR - https://doi.org/10.1104/pp.111.173427 DO - 10.1104/pp.111.173427 ID - Yang2011 ER - TY - JOUR AU - Nakabayashi, K. AU - Okamoto, M. AU - Koshiba, T. AU - Kamiya, Y. AU - Nambara, E. PY - 2005 DA - 2005// TI - Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed JO - Plant J VL - 41 UR - https://doi.org/10.1111/j.1365-313X.2005.02337.x DO - 10.1111/j.1365-313X.2005.02337.x ID - Nakabayashi2005 ER - TY - JOUR AU - Peng, F. Y. AU - Weselake, R. J. PY - 2011 DA - 2011// TI - Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-286 DO - 10.1186/1471-2164-12-286 ID - Peng2011 ER - TY - JOUR AU - Kong, L. A. AU - Xie, Y. AU - Sun, M. Z. AU - Si, J. S. AU - Hu, L. PY - 2016 DA - 2016// TI - Comparison of the photosynthetic characteristics in the pericarp and flag leaves during wheat (Triticum aestivum L.) caryopsis development JO - Photosynthetica VL - 54 UR - https://doi.org/10.1007/s11099-015-0153-y DO - 10.1007/s11099-015-0153-y ID - Kong2016 ER - TY - JOUR AU - Dubouzet, J. G. AU - Sakuma, Y. AU - Ito, Y. AU - Kasuga, M. AU - Dubouzet, E. G. AU - Miura, S. AU - Seki, M. AU - Shinozaki, K. AU - Yamaguchi-Shinozaki, K. PY - 2003 DA - 2003// TI - OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression JO - Plant J VL - 33 UR - https://doi.org/10.1046/j.1365-313X.2003.01661.x DO - 10.1046/j.1365-313X.2003.01661.x ID - Dubouzet2003 ER - TY - JOUR AU - Hubel, A. AU - Schoffl, F. PY - 1994 DA - 1994// TI - Arabidopsis heat shock factor: isolation and characterization of the gene and the recombinant protein JO - Plant Mol Biol VL - 26 UR - https://doi.org/10.1007/BF00039545 DO - 10.1007/BF00039545 ID - Hubel1994 ER - TY - JOUR AU - Li, K. Q. AU - Xu, X. Y. AU - Huang, X. S. PY - 2016 DA - 2016// TI - Identification of differentially expressed genes related to dehydration resistance in a highly drought-tolerant pear, Pyrus betulaefolia, as through RNA-Seq JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0149352 DO - 10.1371/journal.pone.0149352 ID - Li2016 ER - TY - JOUR AU - González-Morales, S. I. AU - Chávez-Montes, R. A. AU - Hayano-Kanashiro, C. AU - Alejo-Jacuinde, G. AU - Rico-Cambron, T. Y. AU - Folter, S. AU - Herrera-Estrella, L. PY - 2016 DA - 2016// TI - Regulatory network analysis reveals novel regulators of seed desiccation tolerance in Arabidopsis thaliana JO - Proc Natl Acad Sci U S A VL - 113 UR - https://doi.org/10.1073/pnas.1610985113 DO - 10.1073/pnas.1610985113 ID - González-Morales2016 ER - TY - JOUR AU - Gubler, F. AU - Kalla, R. AU - Roberts, J. K. AU - Jacobsen, J. V. PY - 1995 DA - 1995// TI - Gibberellin-regulated expression of a myb gene in barley aleurone cells: evidence for Myb transactivation of a high-pI alpha-amylase gene promoter JO - Plant Cell VL - 7 ID - Gubler1995 ER - TY - JOUR AU - Huang, N. AU - Sutliff, T. D. AU - Litts, J. C. AU - Rodriguez, R. L. PY - 1990 DA - 1990// TI - Classification and characterization of the rice alpha-amylase multigene family JO - Plant Mol Biol VL - 14 UR - https://doi.org/10.1007/BF00016499 DO - 10.1007/BF00016499 ID - Huang1990 ER - TY - JOUR AU - Finch-Savage, W. E. AU - Leubner-Metzger, G. PY - 2006 DA - 2006// TI - Seed dormancy and the control of germination JO - New Phytol VL - 171 UR - https://doi.org/10.1111/j.1469-8137.2006.01787.x DO - 10.1111/j.1469-8137.2006.01787.x ID - Finch-Savage2006 ER - TY - STD TI - Jin J, Zhang H, Kong L, Gao G, Luo J. PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic Acids Res. 2014;42:D1182–1187 (2014). Accessed 21 Nov 2015. ID - ref51 ER - TY - JOUR AU - Holdsworth, M. J. AU - Bentsink, L. AU - Soppe, W. J. PY - 2008 DA - 2008// TI - Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination JO - New Phytol VL - 179 UR - https://doi.org/10.1111/j.1469-8137.2008.02437.x DO - 10.1111/j.1469-8137.2008.02437.x ID - Holdsworth2008 ER - TY - JOUR AU - Johnson, R. R. AU - Wagner, R. L. AU - Verhey, S. D. AU - Walker-Simmons, M. K. PY - 2002 DA - 2002// TI - The abscisic acid-responsive kinase PKABA1 interacts with a seed-specific abscisic acid response element-binding factor, TaABF, and phosphorylates TaABF peptide sequences JO - Plant Physiol VL - 130 UR - https://doi.org/10.1104/pp.001354 DO - 10.1104/pp.001354 ID - Johnson2002 ER - TY - JOUR AU - Lopez-Molina, L. AU - Mongrand, S. AU - Kinoshita, N. AU - Chua, N. H. PY - 2003 DA - 2003// TI - AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation JO - Genes Dev VL - 17 UR - https://doi.org/10.1101/gad.1055803 DO - 10.1101/gad.1055803 ID - Lopez-Molina2003 ER - TY - JOUR AU - Rodriguez, M. V. AU - Mendiondo, G. M. AU - Maskin, L. AU - Gudesblat, G. E. AU - Iusem, N. D. AU - Benech-Arnold, R. L. PY - 2009 DA - 2009// TI - Expression of ABA signalling genes and ABI5 protein levels in imbibed Sorghum bicolor caryopses with contrasting dormancy and at different developmental stages JO - Ann Bot VL - 104 UR - https://doi.org/10.1093/aob/mcp184 DO - 10.1093/aob/mcp184 ID - Rodriguez2009 ER - TY - JOUR AU - Tremousaygue, D. AU - Garnier, L. AU - Bardet, C. AU - Dabos, P. AU - Herve, C. AU - Lescure, B. PY - 2003 DA - 2003// TI - Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells JO - Plant J VL - 33 UR - https://doi.org/10.1046/j.1365-313X.2003.01682.x DO - 10.1046/j.1365-313X.2003.01682.x ID - Tremousaygue2003 ER - TY - JOUR AU - Kosugi, S. AU - Ohashi, Y. PY - 1997 DA - 1997// TI - PCF1 And PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene JO - Plant Cell VL - 9 UR - https://doi.org/10.1105/tpc.9.9.1607 DO - 10.1105/tpc.9.9.1607 ID - Kosugi1997 ER - TY - JOUR AU - Tatematsu, K. AU - Ward, S. AU - Leyser, O. AU - Kamiya, Y. AU - Nambara, E. PY - 2005 DA - 2005// TI - Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis JO - Plant Physiol VL - 138 UR - https://doi.org/10.1104/pp.104.057984 DO - 10.1104/pp.104.057984 ID - Tatematsu2005 ER - TY - JOUR AU - Tatematsu, K. AU - Nakabayashi, K. AU - Kamiya, Y. AU - Nambara, E. PY - 2008 DA - 2008// TI - Transcription factor AtTCP14 regulates embryonic growth potential during seed germination in Arabidopsis thaliana JO - Plant J VL - 53 UR - https://doi.org/10.1111/j.1365-313X.2007.03308.x DO - 10.1111/j.1365-313X.2007.03308.x ID - Tatematsu2008 ER - TY - JOUR AU - Xu, H. AU - Zhang, W. AU - Gao, Y. AU - Zhao, Y. AU - Guo, L. AU - Wang, J. PY - 2012 DA - 2012// TI - Proteomic analysis of embryo development in rice (Oryza sativa) JO - Planta VL - 235 UR - https://doi.org/10.1007/s00425-011-1535-4 DO - 10.1007/s00425-011-1535-4 ID - Xu2012 ER - TY - JOUR AU - McCartney, C. A. AU - Somers, D. J. AU - Humphreys, D. G. AU - Lukow, O. AU - Ames, N. AU - Noll, J. AU - Cloutier, S. AU - McCallum, B. D. PY - 2005 DA - 2005// TI - Mapping quantitative trait loci controlling agronomic traits in the spring wheat cross RL4452 x ‘AC domain’ JO - Genome VL - 48 UR - https://doi.org/10.1139/g05-055 DO - 10.1139/g05-055 ID - McCartney2005 ER - TY - JOUR AU - Liu, A. AU - Gao, F. AU - Kanno, Y. AU - Jordan, M. C. AU - Kamiya, Y. AU - Seo, M. AU - Ayele, B. T. PY - 2013 DA - 2013// TI - Regulation of wheat seed dormancy by after-ripening is mediated by specific transcriptional switches that induce changes in seed hormone metabolism and signaling JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0056570 DO - 10.1371/journal.pone.0056570 ID - Liu2013 ER - TY - JOUR AU - Li, Z. AU - Trick, H. N. PY - 2005 DA - 2005// TI - Rapid method for high-quality RNA isolation from seed endosperm containing high levels of starch JO - BioTechniques VL - 38 UR - https://doi.org/10.2144/05386BM05 DO - 10.2144/05386BM05 ID - Li2005 ER - TY - STD TI - Jordan MC, Somers DJ, Banks TW. Identifying regions of the wheat genome controlling seed development by mapping expression quantitative trait loci. Plant Biotechnol J. 200;75:442–453. ID - ref64 ER - TY - JOUR AU - Saeed, A. I. AU - Bhagabati, N. K. AU - Braisted, J. C. AU - Liang, W. AU - Sharov, V. AU - Howe, E. A. AU - Li, J. AU - Thiagarajan, M. AU - White, J. A. AU - Quackenbush, J. PY - 2006 DA - 2006// TI - TM4 Microarray software suite JO - Methods in Enzymol VL - 411 UR - https://doi.org/10.1016/S0076-6879(06)11009-5 DO - 10.1016/S0076-6879(06)11009-5 ID - Saeed2006 ER - TY - STD TI - Blazejczyk M, Miron M, Nadon R. FlexArray: a statistical data analysis software for gene expression microarrays. Genome Quebec, Montreal, Canada. 2007;2007 ID - ref66 ER - TY - JOUR AU - Du, Z. AU - Zhou, X. AU - Ling, Y. AU - Zhang, Z. AU - Su, Z. PY - 2010 DA - 2010// TI - agriGO: a GO analysis toolkit for the agricultural community JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq310 DO - 10.1093/nar/gkq310 ID - Du2010 ER - TY - STD TI - HarvEST: WheatChip version 1.59. Available: http://harvest.ucr.edu/. Accessed 7 Sept 2014. UR - http://harvest.ucr.edu/ ID - ref68 ER - TY - JOUR AU - Shannon, P. AU - Markiel, A. AU - Ozier, O. AU - Baliga, N. S. AU - Wang, J. T. AU - Ramage, D. AU - Amin, N. AU - Schwikowski, B. AU - Ideker, T. PY - 2003 DA - 2003// TI - Cytoscape: a software environment for integrated models of biomolecular interaction networks JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1239303 DO - 10.1101/gr.1239303 ID - Shannon2003 ER - TY - STD TI - Plant Expression Database (PLEXdb) tools. Available: http://www.plexdb.org/. Accessed 21 Nov 2015 . UR - http://www.plexdb.org/ ID - ref70 ER - TY - JOUR AU - Nguyen, T. N. AU - Son, S. AU - Jordan, M. C. AU - Levin, D. B. AU - Ayele, B. T. PY - 2016 DA - 2016// TI - Lignin biosynthesis in wheat (Triticum aestivum L.): its response to waterlogging and association with hormonal levels JO - BMC Plant Biol VL - 16 UR - https://doi.org/10.1186/s12870-016-0717-4 DO - 10.1186/s12870-016-0717-4 ID - Nguyen2016 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER -