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Table 4 Exonic or 5′ UTR polymorphisms significantly associated with chain length distribution (CLD) trait variation in pea lines and their predicted effects on translation product sequence

From: Association mapping of starch chain length distribution and amylose content in pea (Pisum sativum L.) using carbohydrate metabolism candidate genes

Candidate gene

Alignment PopSet number

Site on alignment

Variant

Effects (site on reference sequence translation)

AGPS2

694,187,965

145

T/C

In exon; CTT / CTC, leucine -> leucine, synonymous

UGPase

694,186,492

336

T/C

Variant in the first base of the exon, adjacent to a predicted intron acceptor site; codon change AGT / AGC, serine -> serine, synonymous

Starch synthase II (rug5)

1,206,484,033

307

G/A

In exon; GGT / AGT, glycine -> serine (249), non-synonymous

AGPL1 (rb)

694,185,424

9

A/C

In 5′ UTR