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Table 4 Tags related to proline-rich (PR) and transmembrane (TM) sequences and their distribution

From: Deep Super-SAGE transcriptomic analysis of cold acclimation in lentil (Lens culinaris Medik.)

 

NAS

NAT

AS

AT

Type

CATGATGTTTTTAAGTAAATATGTAA

A2 = T23

 

0.25

4.67

106.34 a

PR

CATGGGATATATATTCTTGTAATCTT

A5

0.47

1.50

59.73

365.82

PR

CATGCCTTTTGATTTTATTATCAGCAb

A6

0.24

4.49

54.31

679.82

PR

CATGTTGTCCATTGATAAAAGGACTCc

A10

 

0.25

2.24

16.72

PR

CATGTTCCCAAACCACCTGTTGCCCC

A14

  

0.56

30.76

PR

CATGAATATAAAAAATACTTGAGATG

AT1

   

1102.15

PR&TM

CATGAATATAAGAAATACTTGAGATG

S25

45.97

13.46

313.57

 

PR&TM

CATGTAATAGTATTGTGATTTCTGCT

A21 = S6

0.24

0.25

16.99

 

TM

CATGTTATGAATGAAAAATTACGTGT

AT9

   

59.19

TM

CATGAAGCATTTTTAGAATGTAAAAA

AT18

   

30.76

TM

CATGTTTATTATTTTTATAAAATTAT

A17 = T15

 

0.50

 

24.74

TM

CATGCAATAAATCTATAAATTATATC

NAT33

 

20.19

  

TM

CATGGAAGAATGTTTACTTGTTCTTC

NAT42

 

15.95

  

TM

CATGAAGAAAAATGAGACAAGATCTT

S9

24.40

 

6.16

 

TM

  1. aNumbers in bold indicate the highest value for each tag, normalized values. Empty cells indicate zero observations
  2. bA6 and A10 identified the same lentil sequence in two points along it sequence
  3. cSee also the transmembrane sequences referred in Table 2