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Table 1 Numbers of DMRs identified by MeDIP-seq, and assigned to subgenomic regionsa

From: Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation

Comp. DMR Total CGI Promoter Exon Intron TTR
I vs. CK Total 7036 830 2317 1684 1788 778
Hyper 5376 525 1830 1375 1254 664
Hypo 1660 305 487 309 534 114
II vs. CK Total 18,887 3293 6728 4440 4006 2040
Hyper 12,372 1213 4538 3315 2485 1696
Hypo 6515 2080 2190 1125 1521 344
III vs. CK Total 11,514 1419 3670 2899 2481 1376
Hyper 9773 1108 3142 2544 1963 1273
Hypo 1741 311 528 355 518 103
II vs. I Total 5106 842 1413 1077 1440 432
Hyper 2234 143 731 568 628 237
Hypo 2872 699 682 509 812 195
III vs. II Total 5765 1174 1643 1124 1595 453
Hyper 3667 1074 923 604 942 237
Hypo 2098 100 720 520 653 216
III vs. I Total 3742 363 969 874 1055 358
Hyper 2339 244 575 545 633 234
Hypo 1403 119 394 329 422 124
  1. aDMR, differentially methylated region; CGI, CG island; TTR, transcription termination region