Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation

BMC Plant Biology

Table 1 Numbers of DMRs identified by MeDIP-seq, and assigned to subgenomic regions^a

Comp.	DMR	Total	CGI	Promoter	Exon	Intron	TTR
I vs. CK	Total	7036	830	2317	1684	1788	778
	Hyper	5376	525	1830	1375	1254	664
	Hypo	1660	305	487	309	534	114
II vs. CK	Total	18,887	3293	6728	4440	4006	2040
	Hyper	12,372	1213	4538	3315	2485	1696
	Hypo	6515	2080	2190	1125	1521	344
III vs. CK	Total	11,514	1419	3670	2899	2481	1376
	Hyper	9773	1108	3142	2544	1963	1273
	Hypo	1741	311	528	355	518	103
II vs. I	Total	5106	842	1413	1077	1440	432
	Hyper	2234	143	731	568	628	237
	Hypo	2872	699	682	509	812	195
III vs. II	Total	5765	1174	1643	1124	1595	453
	Hyper	3667	1074	923	604	942	237
	Hypo	2098	100	720	520	653	216
III vs. I	Total	3742	363	969	874	1055	358
	Hyper	2339	244	575	545	633	234
	Hypo	1403	119	394	329	422	124

^aDMR, differentially methylated region; CGI, CG island; TTR, transcription termination region

ISSN: 1471-2229