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Table 1 Metrics for cranberry bean seed coat transcripts generated by Illumina sequencing

From: Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

  Darkening RIL seed coats Non-Darkening RIL seed coats
Early Intermediate Mature Early Intermediate Mature
Raw reads 55,936,639 (±5.9%) 50,956,017 (±4.4%) 50,662,455 (± 5.4%) 54,666,751 (± 7.5%) 52,473,537 (±6.2%) 54,424,625 (± 6.4%)
Trimmed reads 51,875,329 (±5.0%) 47,244,783 (± 4.4%) 47,241,601 (± 4.9%) 50,916,550 (± 7.5%) 48,876,790 (± 5.9%) 50,446,588 (± 5.4%)
Total mappings 50,185,242 (± 4.8%) 45,620,314 (± 4.5%) 45,831,924 (± 4.9%) 49,381,726 (± 7.5%) 47,212,581 (± 5.9%) 48,831,478 (± 5.2%)
Single mappings 49,391,395 (± 4.8%) 45,003,334 (± 4.5%) 45,174,334 (±4.8%) 48,592,490 (±7.5%) 46,573,926 (± 5.9%) 48,173,184 (± 5.2%)
Multi mappings 793,847 (± 4.1%) 616,980 (± 6.4%) 657,590 (± 7.7%) 789,237 (± 6.4%) 638,656 (±5.7%) 658,294 (± 5.8%)
Alignment (%) 95.3 (± 0.3%) 95.3 (± 0.2%) 95.7 (± 0.1%) 95.5 (±0.2%) 95.4 (± 0.2%) 95.6 (± 0.2%)
Transcripts 42,715 (±0.7%) 41,368 (± 0.3%) 41,077 (± 0.4%) 42,921 (±0.5%) 41,400 (± 0.2%) 40,993 (± 0.2%)
Gene counts 27,915 27,727 27,661 27,897 27,683 27,626
  1. For each RIL developmental stage, data represents the mean ± percent standard error (denoted in brackets) of three greenhouse replicates.