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Table 4 Candidate genes enriched in phenylpropanoid biosynthesis and plant hormone signal transduction pathway

From: Transcriptome profiling of Elymus sibiricus, an important forage grass in Qinghai-Tibet plateau, reveals novel insights into candidate genes that potentially connected to seed shattering

KEGG pathway Gene Definition KO id EC no. No.Alla No.Upb No.Downc
Plant hormone signal transduction
Abscisic acid PP2C protein phosphatase 2C K14497 3.1.3.16 5 4 1
  SRK2 serine/threonine-protein kinase K14498 2.7.11.1 2 2 0
  ABF ABA responsive element binding factor K14432   3 1 2
Ethylene ETR ethylene receptor K14509 2.7.13.- 2 2 0
  EIN2 ethylene-insensitive protein 2 K14513   3 2 1
  EIN3 ethylene-insensitive protein 3 K14524   2 2 0
Auxin AUX1 auxin influx carrier K13946   1 0 1
  IAA auxin-responsive protein IAA K14484   6 1 5
  ARF auxin response factor K14486   2 1 1
  GH3 auxin responsive GH3 gene family K14487   2 0 2
  SAUR SAUR family protein K14488   6 1 5
Cytokinine CRE1 arabidopsis histidine kinase 2/3/4 K14489 EC:2.7.13.3 1 0 1
  AHP histidine-containing phosphotransfer peotein K14490   1 1 0
  B-ARR two-component response regulator ARR-B family K14491   3 0 3
  ARR-A two-component response regulator ARR-B family K14492   3 0 3
Gibberellin TF phytochrome-interacting factor 4 K16189   1 0 1
Brassinosteroid BRI1 protein brassinosteroid insensitive 1 K13415 EC:2.7.10.1 1 0 1
  BSK BR-signaling kinase K14500 EC:2.7.11.1 1 1 0
Jasmonic acid COI1 coronatine-insensitive protein 1 K13463   1 0 1
  JAZ jasmonate ZIM domain-containing protein K13464   2 0 2
Salicylic acid NPR1 regulatory protein NPR1 K14508   3 1 2
  TGA transcription factor TGA K14431   3 0 3
Phenylpropanoid biosynthesis PAL phenylalanine ammonia-lyase K10775 4.3.1.24 5 0 5
  4CL 4-coumarate--CoA ligase K01904 6.2.1.12 4 0 4
  P/TAL phenylalanine/tyrosine ammonia-lyase K13064 4.3.1.25 1 0 1
  F5H ferulate-5-hydroxylase K09755 1.14.-.- 1 0 1
  CCoa-OMT caffeoyl-CoA O-methyltransferase K00588 2.1.1.104 2 0 2
  CALDH coniferyl-aldehyde dehydrogenase K12355 1.2.1.68 1 0 1
  BGLU beta-glucosidase K01188 3.2.1.21 8 3 5
  CCR cinnamoyl-CoA reductase K09753 1.2.1.44 3 2 1
  CAD cinnamyl-alcohol dehydrogenase K00083 1.1.1.195 5 2 3
  POX peroxidase K00430 1.11.1.7 21 6 15
  SOH shikimate O-hydroxycinnamoyltransferase K13065 2.3.1.133 6 2 4
  C3’H Coumaroylquinate (coumaroylshikimate) 3′-monooxygenase K09754 1.14.13.36 2 1 1
  1. athe total number of uni-transcripts analysed
  2. bthe number of uni-transcripts with expression significantly up-regulated in high seed shattering genotype compared with low seed shattering genotype
  3. cthe number of uni-transcripts with expression significantly down-regulated in high seed shattering genotype compared with low seed shattering genotype