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Table 1 List of methylated proteins found in E. grandis root or leaf tissues

From: Root morphogenic pathways in Eucalyptus grandis are modified by the activity of protein arginine methyltransferases

 

Protein

Gene No.

RPKM/FPKM

Score

Methylated Peptide Sequences Identified by Mass Spectrometry

Predicted MW (kDa)

Root Proteins

14-3-3-like protein A

Eucgr.B00034.1

254

4311

165AAQDIANSELAPTHPIR

29

5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase A

Eucgr.J00612.1

30

8021, 47.162

33ISTGTGTGTGTRR

91

Aspartic proteinase nepenthesin-like protein B

Eucgr.G03227.1

147

43.972

 

47

ATP synthase subunit beta, mitochondrial A,B

Eucgr.G02224.1

102

6681

163VLNTGSPITVPVGR

60

Endochitinase A2 A, B

Eucgr.I01495.1

37

2291, 58.252

107SFPAFGTTGDAATR

33

Glyceraldehyde-3-phosphate dehydrogenase A,B

Eucgr.B00144.1

73

6201, 62.032

274GILGYTEEDVVSTDFVGDSR

36

Heat shock 70 kDa protein A

Eucgr.J00023.1

210

4801, 70.882

40TTPSYVGFTDSER 60NQVAMNPVNTVFDAKR

59

Heat shock 80 kDa protein A

Eucgr.F03673.1

555

1951

162DTSGEVLGR

80

Malic Enzyme A

Eucgr.C01003.1

354

2241

568YAESCMYSPVYR

64

Nucleoside diphosphate kinase 1A

Eucgr.D01220.1

270

3871

112NVIHGSDSVESARK

16

Oxygen evolving enhancer protein 1A

Eucgr.I01025.1

31

38.532

17VGRISSSQLR

35

Leaf Proteins

ATP synthase delta chain, chloroplastic B

Eucgr.F04149.1

39

2151

 

24

ATP synthase gamma chain, chloroplastic B

Eucgr.E04053.1

20

1041, 27.462

 

40

ATP synthase subunit beta, chloroplastic A,B

Eucgr.H02991.1

9

25261, 80.182

1MRINPTTSGPGVSTLEK

53

Basic endochitinase A B

Eucgr.I02271.1

3,414

721

 

29

Basic endochitinase C B

Eucgr.I02246.1

282

31.82

 

16

Carbonic anhydrase, chloroplastic B

Eucgr.I01790.1

97

1161, 66.312

 

41

Chlorophyll a-b binding protein A

Eucgr.D00322.1

29

3471

197WAMLGALGCVFPELLAR

38

Cytochrome B6 A

Eucgr.E04205.1

10

2581

136IVTGVPEAIPVGSPVVELLRIGSASVGQSTLTR

24

Fructose-bisphosphate aldolase A

Eucgr.G01726.1

53

8511, 32.852

82LASIGLENTEANRQAYR

42

Glutamine synthetase B

Eucgr.B01163.1

8

1131

 

48

Mediator of RNA Polymerase II Transcription Subunit

Eucgr.J00025.1

1,039

6871

123VEIIANDQGNRTTPSYVAFTDTER

81

Malate dehydrogenase, glyoxysomalB

Eucgr.H02358.1

53

2511

 

34

Oxygen-evolving enhancer protein 3–2, chloroplastic B

Eucgr.D00854.1

33

3131, 73.742

 

24

Phosphoglycerate kinase A,B

Eucgr.F01476.1

22

5641, 63.642

173ADDCIGPEVEKLVASLPEGGVLLLENVR

50

Photosystem I reaction center subunit IV B, chloroplastic B

Eucgr.B02162.1

67

1111

 

15

Ribulose bisphosphate carboxylase large chain A

Eucgr.C03525.1

49

18001

165YGRPLLGCTIKPK 195GGLDFTKDDENVNSQPFMR 340DITLGFVDLVRDDFIEKDR 436DLAREGXDIIR

52

Ribulose bisphosphate carboxylase small chain A,B

Eucgr.B03013.1

23

4101

155IRIIGFDNKR

20

Ribulose bisphosphate carboxylase/oxygenase activase A

Eucgr.J01234.1

42

72.192

274EENPRVPIIVTGNDFSTLYAPLIR 311EDRIGVCMGIFR 351ARVYDDEVRK

51

Ribulose-phosphate 3-epimerase, chloroplastic B

Eucgr.B00532.1

41

27.542

 

29

Thylakoid lumenal 29 kDa, chloroplastic A

Eucgr.F00373.1

4

7621, 51.082

264DKFSAIGFGPRQTATETLLAADPDVSPWVQK

37

  1. List of proteins identified from whole cell lysates (A) or ASYM24 IP column elutions (B). Score determined by either Mascot (1) or Peaks (−10logP) (2). Methylated arginines within sequences indicated in bold (dimethylated) or underlined (monomethylated). Root expression data (RPKM) was taken from Plett et al. [62] and foliar expression data (FPKM) were obtained from https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Egrandis (accessed November 2016)