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Table 2 Average expected number of SNPs between a pair of genotypes based on Gossypium germplasm group

From: Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

  

G. hirsutum

G. hirsutum, improved

G. hirsutum, improved, US

Group

Gossypium spp.

Overall

Improved

Wild

US

Other countries

Eastern

Mid-south

Plains

Western

N/A

Gossypium spp.

7167.8

          

G. hirsutum overall

6866.0

6564.2

         

 Improved

6408.7

6107.0

5649.7

        

 Wild

7029.7

6727.9

6270.6

6891.5

       

G. hirsutum, improved

           

 US

6334.5

6032.7

5575.5

6196.4

5501.2

      

 Other countries

6441.7

6139.9

5682.7

6303.6

5608.5

5715.7

     

G. hirsutum, improved, US

           

 Eastern

6154.2

5852.5

5395.2

6016.1

5321.0

5428.2

5140.7

    

 Mid-south

5744.1

5442.3

4985.1

5606.0

4910.8

5018.1

4730.6

4320.4

   

 Plains

6212.6

5910.9

5453.6

6074.5

5379.4

5486.6

5199.1

4789.0

5257.5

  

 Western

5875.9

5574.1

5116.9

5737.8

5042.6

5149.8

4862.4

4452.2

4920.8

4584.0

 

 N/A

6350.6

6048.8

5591.5

6212.5

5517.3

5624.5

5337.0

4926.9

5395.5

5058.7

5533.4

  1. Calculations were based on the average MAF (including monomorphic SNPs) for each group obtained from Table 1