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Table 1 Measures of SNP-based genetic diversity within G. hirsutum germplasm groups

From: Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

   Average MAF   
Group N Including monomorphic Excluding monomorphic Total polymorphic SNPs (proportion) Genetic diversity (HE)
Gossypium spp. 390 0.184 0.213 33507 (0.86) 0.249
G. hirsutum 363 0.169 0.252 25829 (0.67) 0.225
G. hirsutum, improved 292 0.145 0.242 23145 (0.60) 0.195
G. hirsutum, wild 71 0.177 0.260 26299 (0.68) 0.232
G. hirsutum, improved, US 185 0.141 0.241 22626 (0.58) 0.190
G. hirsutum, improved, other countries 107 0.147 0.248 22961 (0.59) 0.197
G. hirsutum, improved, US, eastern 48 0.132 0.234 21810 (0.56) 0.177
G. hirsutum, improved, US, mid-south 48 0.111 0.222 19357 (0.50) 0.151
G. hirsutum, improved, US, plains 43 0.135 0.245 21350 (0.55) 0.183
G. hirsutum, improved, US, western 12 0.118 0.267 17093 (0.44) 0.157
G. hirsutum, improved, US, n/a 34 0.142 0.231 23851 (0.62) 0.193
  1. Number of polymorphic SNPs (MAF ≥ 0.01) was calculated out of 38,822 SNPs. N sample size, MAF minor allele frequency