TY - BOOK AU - Darwin, C. AU - Darwin, F. PY - 1880 DA - 1880// TI - The power of movement in plants PB - John Murray CY - London UR - https://doi.org/10.5962/bhl.title.102319 DO - 10.5962/bhl.title.102319 ID - Darwin1880 ER - TY - JOUR AU - Larsen, P. PY - 1973 DA - 1973// TI - Gravity sensing by plants JO - Life Sci Space Res VL - 11 ID - Larsen1973 ER - TY - JOUR AU - Arnaud, C. AU - Bonnot, C. AU - Desnos, T. AU - Nussaume, L. PY - 2010 DA - 2010// TI - The root cap at the forefront JO - C R Biol VL - 333 UR - https://doi.org/10.1016/j.crvi.2010.01.011 DO - 10.1016/j.crvi.2010.01.011 ID - Arnaud2010 ER - TY - JOUR AU - Cassab, G. I. AU - Eapen, D. AU - Campos, M. E. PY - 2013 DA - 2013// TI - Root hydrotropism: an update JO - Am J Bot VL - 100 UR - https://doi.org/10.3732/ajb.1200306 DO - 10.3732/ajb.1200306 ID - Cassab2013 ER - TY - BOOK PY - 2013 DA - 2013// TI - Plant roots: The hidden half PB - CRC Press CY - Boca Raton ID - ref5 ER - TY - JOUR AU - Lopez, D. AU - Tocquard, K. AU - Venisse, J. S. AU - Legue, V. AU - Roeckel-Drevet, P. PY - 2014 DA - 2014// TI - Gravity sensing, a largely misunderstood trigger of plant orientated growth JO - Front Plant Sci VL - 5 UR - https://doi.org/10.3389/fpls.2014.00610 DO - 10.3389/fpls.2014.00610 ID - Lopez2014 ER - TY - JOUR AU - Oliva, M. AU - Dunand, C. PY - 2007 DA - 2007// TI - Waving and skewing: how gravity and the surface of growth media affect root development in Arabidopsis JO - New Phytol VL - 176 UR - https://doi.org/10.1111/j.1469-8137.2007.02184.x DO - 10.1111/j.1469-8137.2007.02184.x ID - Oliva2007 ER - TY - JOUR AU - Roy, R. AU - Bassham, D. C. PY - 2014 DA - 2014// TI - Root growth movements: waving and skewing JO - Plant Sci VL - 221–222 UR - https://doi.org/10.1016/j.plantsci.2014.01.007 DO - 10.1016/j.plantsci.2014.01.007 ID - Roy2014 ER - TY - JOUR AU - Migliaccio, F. AU - Fortunati, A. AU - Tassone, P. PY - 2009 DA - 2009// TI - Arabidopsis root growth movements and their symmetry: progress and problems arising from recent work JO - Plant Signal Behav VL - 4 UR - https://doi.org/10.4161/psb.4.3.7959 DO - 10.4161/psb.4.3.7959 ID - Migliaccio2009 ER - TY - JOUR AU - Buer, C. S. AU - Wasteneys, G. O. AU - Masle, J. PY - 2003 DA - 2003// TI - Ethylene modulates root-wave responses in Arabidopsis JO - Plant Physiol VL - 132 UR - https://doi.org/10.1104/pp.102.019182 DO - 10.1104/pp.102.019182 ID - Buer2003 ER - TY - JOUR AU - Pandey, S. AU - Monshausen, G. B. AU - Ding, L. AU - Assmann, S. M. PY - 2008 DA - 2008// TI - Regulation of root-wave response by extra large and conventional G proteins in Arabidopsis thaliana JO - Plant J VL - 55 UR - https://doi.org/10.1111/j.1365-313X.2008.03506.x DO - 10.1111/j.1365-313X.2008.03506.x ID - Pandey2008 ER - TY - JOUR AU - Vaughn, L. M. AU - Masson, P. H. PY - 2011 DA - 2011// TI - A QTL study for regions contributing to Arabidopsis thaliana root skewing on tilted surfaces JO - G3 (Bethesda) VL - 1 UR - https://doi.org/10.1534/g3.111.000331 DO - 10.1534/g3.111.000331 ID - Vaughn2011 ER - TY - JOUR AU - Yuen, C. Y. AU - Sedbrook, J. C. AU - Perrin, R. M. AU - Carroll, K. L. AU - Masson, P. H. PY - 2005 DA - 2005// TI - Loss-of-function mutations of ROOT HAIR DEFECTIVE3 suppress root waving, skewing, and epidermal cell file rotation in Arabidopsis JO - Plant Physiol VL - 138 UR - https://doi.org/10.1104/pp.105.059774 DO - 10.1104/pp.105.059774 ID - Yuen2005 ER - TY - JOUR AU - Okada, K. AU - Shimura, Y. PY - 1990 DA - 1990// TI - Reversible root tip rotation in Arabidopsis seedlings induced by obstacle-touching stimulus JO - Science VL - 250 UR - https://doi.org/10.1126/science.250.4978.274 DO - 10.1126/science.250.4978.274 ID - Okada1990 ER - TY - JOUR AU - Thompson, M. V. AU - Holbrook, N. M. PY - 2004 DA - 2004// TI - Root-gel interactions and the root waving behavior of Arabidopsis JO - Plant Physiol VL - 135 UR - https://doi.org/10.1104/pp.104.040881 DO - 10.1104/pp.104.040881 ID - Thompson2004 ER - TY - JOUR AU - Millar, K. D. AU - Johnson, C. M. AU - Edelmann, R. E. AU - Kiss, J. Z. PY - 2011 DA - 2011// TI - An endogenous growth pattern of roots is revealed in seedlings grown in microgravity JO - Astrobiology VL - 11 UR - https://doi.org/10.1089/ast.2011.0699 DO - 10.1089/ast.2011.0699 ID - Millar2011 ER - TY - JOUR AU - Paul, A. L. AU - Amalfitano, C. E. AU - Ferl, R. J. PY - 2012 DA - 2012// TI - Plant growth strategies are remodeled by spaceflight JO - BMC Plant Biol VL - 12 UR - https://doi.org/10.1186/1471-2229-12-232 DO - 10.1186/1471-2229-12-232 ID - Paul2012 ER - TY - JOUR AU - Nakashima, J. AU - Liao, F. AU - Sparks, J. A. AU - Tang, Y. AU - Blancaflor, E. B. PY - 2014 DA - 2014// TI - The actin cytoskeleton is a suppressor of the endogenous skewing behaviour of Arabidopsis primary roots in microgravity JO - Plant Biol (Stuttg) VL - 16 UR - https://doi.org/10.1111/plb.12062 DO - 10.1111/plb.12062 ID - Nakashima2014 ER - TY - JOUR AU - Bidzinski, P. AU - Noir, S. AU - Shahi, S. AU - Reinstadler, A. AU - Gratkowska, D. M. AU - Panstruga, R. PY - 2014 DA - 2014// TI - Physiological characterization and genetic modifiers of aberrant root thigmomorphogenesis in mutants of Arabidopsis thaliana MILDEW LOCUS O genes JO - Plant Cell Environ VL - 37 UR - https://doi.org/10.1111/pce.12353 DO - 10.1111/pce.12353 ID - Bidzinski2014 ER - TY - JOUR AU - Kushwah, S. AU - Jones, A. M. AU - Laxmi, A. PY - 2011 DA - 2011// TI - Cytokinin-induced root growth involves actin filament reorganization JO - Plant Signal Behav VL - 6 UR - https://doi.org/10.4161/psb.6.11.17641 DO - 10.4161/psb.6.11.17641 ID - Kushwah2011 ER - TY - JOUR AU - Kushwah, S. AU - Jones, A. M. AU - Laxmi, A. PY - 2011 DA - 2011// TI - Cytokinin interplay with ethylene, auxin, and glucose signaling controls Arabidopsis seedling root directional growth JO - Plant Physiol VL - 156 UR - https://doi.org/10.1104/pp.111.175794 DO - 10.1104/pp.111.175794 ID - Kushwah2011 ER - TY - JOUR AU - Sedbrook, J. AU - Boonsirichai, K. AU - Chen, R. AU - Hilson, P. AU - Pearlman, R. AU - Rosen, E. AU - Rutherford, R. AU - Batiza, A. AU - Carroll, K. AU - Schulz, T. PY - 1998 DA - 1998// TI - Molecular genetics of root gravitropism and waving in Arabidopsis thaliana JO - Gravit Space Biol Bull VL - 11 ID - Sedbrook1998 ER - TY - JOUR AU - Antosiewicz, D. M. AU - Polisensky, D. H. AU - Braam, J. PY - 1995 DA - 1995// TI - Cellular localization of the Ca2+ binding TCH3 protein of Arabidopsis JO - Plant J VL - 8 UR - https://doi.org/10.1046/j.1365-313X.1995.08050623.x DO - 10.1046/j.1365-313X.1995.08050623.x ID - Antosiewicz1995 ER - TY - JOUR AU - Weerasinghe, R. R. AU - Swanson, S. J. AU - Okada, S. F. AU - Garrett, M. B. AU - Kim, S. Y. AU - Stacey, G. AU - Boucher, R. C. AU - Gilroy, S. AU - Jones, A. M. PY - 2009 DA - 2009// TI - Touch induces ATP release in Arabidopsis roots that is modulated by the heterotrimeric G-protein complex JO - FEBS Lett VL - 583 UR - https://doi.org/10.1016/j.febslet.2009.07.007 DO - 10.1016/j.febslet.2009.07.007 ID - Weerasinghe2009 ER - TY - JOUR AU - Monshausen, G. B. AU - Haswell, E. S. PY - 2013 DA - 2013// TI - A force of nature: molecular mechanisms of mechanoperception in plants JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ert204 DO - 10.1093/jxb/ert204 ID - Monshausen2013 ER - TY - JOUR AU - Iida, H. AU - Furuichi, T. AU - Nakano, M. AU - Toyota, M. AU - Sokabe, M. AU - Tatsumi, H. PY - 2014 DA - 2014// TI - New candidates for mechano-sensitive channels potentially involved in gravity sensing in Arabidopsis thaliana JO - Plant Biol (Stuttg) VL - 16 UR - https://doi.org/10.1111/plb.12044 DO - 10.1111/plb.12044 ID - Iida2014 ER - TY - JOUR AU - Nakano, M. AU - Samejima, R. AU - Iida, H. PY - 2014 DA - 2014// TI - Mechanosensitive channel candidate MCA2 is involved in touch-induced root responses in Arabidopsis JO - Front Plant Sci VL - 5 ID - Nakano2014 ER - TY - JOUR AU - Swanson, S. J. AU - Barker, R. AU - Ye, Y. AU - Gilroy, S. PY - 2015 DA - 2015// TI - Evaluating mechano-transduction and touch responses in plant roots JO - Methods Mol Biol VL - 1309 UR - https://doi.org/10.1007/978-1-4939-2697-8_12 DO - 10.1007/978-1-4939-2697-8_12 ID - Swanson2015 ER - TY - JOUR AU - Digby, J. AU - Firn, R. D. PY - 1995 DA - 1995// TI - The gravitropic set-point angle (GSA): the identification of an important developmentally controlled variable governing plant architecture JO - Plant Cell Environ VL - 18 UR - https://doi.org/10.1111/j.1365-3040.1995.tb00205.x DO - 10.1111/j.1365-3040.1995.tb00205.x ID - Digby1995 ER - TY - JOUR AU - Roychoudhry, S. AU - Bianco, M. AU - Kieffer, M. AU - Kepinski, S. PY - 2013 DA - 2013// TI - Auxin controls gravitropic setpoint angle in higher plant lateral branches JO - Curr Biol VL - 23 UR - https://doi.org/10.1016/j.cub.2013.06.034 DO - 10.1016/j.cub.2013.06.034 ID - Roychoudhry2013 ER - TY - JOUR AU - Roychoudhry, S. AU - Kepinski, S. PY - 2015 DA - 2015// TI - Analysis of gravitropic setpoint angle control in Arabidopsis JO - Methods Mol Biol VL - 1309 UR - https://doi.org/10.1007/978-1-4939-2697-8_4 DO - 10.1007/978-1-4939-2697-8_4 ID - Roychoudhry2015 ER - TY - JOUR AU - Rosquete, M. R. AU - Wangenheim, D. AU - Marhavy, P. AU - Barbez, E. AU - Stelzer, E. H. AU - Benkova, E. AU - Maizel, A. AU - Kleine-Vehn, J. PY - 2013 DA - 2013// TI - An auxin transport mechanism restricts positive orthogravitropism in lateral roots JO - Curr Biol VL - 23 UR - https://doi.org/10.1016/j.cub.2013.03.064 DO - 10.1016/j.cub.2013.03.064 ID - Rosquete2013 ER - TY - JOUR AU - Digby, J. AU - Firn, R. D. PY - 2002 DA - 2002// TI - Light modulation of the gravitropic set-point angle (GSA) JO - J Exp Bot VL - 53 UR - https://doi.org/10.1093/jexbot/53.367.377 DO - 10.1093/jexbot/53.367.377 ID - Digby2002 ER - TY - JOUR AU - Wan, Y. L. AU - Eisinger, W. AU - Ehrhardt, D. AU - Kubitscheck, U. AU - Baluska, F. AU - Briggs, W. PY - 2008 DA - 2008// TI - The subcellular localization and blue-light-induced movement of phototropin 1-GFP in etiolated seedlings of Arabidopsis thaliana JO - Mol Plant VL - 1 UR - https://doi.org/10.1093/mp/ssm011 DO - 10.1093/mp/ssm011 ID - Wan2008 ER - TY - JOUR AU - Kiss, J. Z. AU - Millar, K. D. AU - Edelmann, R. E. PY - 2012 DA - 2012// TI - Phototropism of Arabidopsis thaliana in microgravity and fractional gravity on the International Space Station JO - Planta VL - 236 UR - https://doi.org/10.1007/s00425-012-1633-y DO - 10.1007/s00425-012-1633-y ID - Kiss2012 ER - TY - JOUR AU - Kutschera, U. AU - Briggs, W. R. PY - 2012 DA - 2012// TI - Root phototropism: from dogma to the mechanism of blue light perception JO - Planta VL - 235 UR - https://doi.org/10.1007/s00425-012-1597-y DO - 10.1007/s00425-012-1597-y ID - Kutschera2012 ER - TY - JOUR AU - Zhang, K. X. AU - Xu, H. H. AU - Yuan, T. T. AU - Zhang, L. AU - Lu, Y. T. PY - 2013 DA - 2013// TI - Blue-light-induced PIN3 polarization for root negative phototropic response in Arabidopsis JO - Plant J VL - 76 ID - Zhang2013 ER - TY - JOUR AU - Moriwaki, T. AU - Miyazawa, Y. AU - Fujii, N. AU - Takahashi, H. PY - 2014 DA - 2014// TI - GNOM regulates root hydrotropism and phototropism independently of PIN-mediated auxin transport JO - Plant Sci VL - 215–216 UR - https://doi.org/10.1016/j.plantsci.2013.11.002 DO - 10.1016/j.plantsci.2013.11.002 ID - Moriwaki2014 ER - TY - JOUR AU - Yokawa, K. AU - Fasano, R. AU - Kagenishi, T. AU - Baluska, F. PY - 2014 DA - 2014// TI - Light as stress factor to plant roots - case of root halotropism JO - Front Plant Sci VL - 5 UR - https://doi.org/10.3389/fpls.2014.00718 DO - 10.3389/fpls.2014.00718 ID - Yokawa2014 ER - TY - JOUR AU - Haga, K. AU - Tsuchida-Mayama, T. AU - Yamada, M. AU - Sakai, T. PY - 2015 DA - 2015// TI - Arabidopsis ROOT PHOTOTROPISM2 contributes to the adaptation to high-intensity light in phototropic responses JO - Plant Cell VL - 27 UR - https://doi.org/10.1105/tpc.15.00178 DO - 10.1105/tpc.15.00178 ID - Haga2015 ER - TY - JOUR AU - Sato, E. M. AU - Hijazi, H. AU - Bennett, M. J. AU - Vissenberg, K. AU - Swarup, R. PY - 2015 DA - 2015// TI - New insights into root gravitropic signalling JO - J Exp Bot VL - 66 UR - https://doi.org/10.1093/jxb/eru515 DO - 10.1093/jxb/eru515 ID - Sato2015 ER - TY - STD TI - Silva-Navas J, Moreno-Risueno MA, Manzano C, Pallero-Baena M, Navarro-Neila S, Tellez-Robledo B, Garcia-Mina JM, Baigorri R, Javier Gallego F, Del Pozo JC. D-Root: a system to cultivate plants with the root in darkness or under different light conditions. Plant J. 2015;84(1):244–55. ID - ref42 ER - TY - JOUR AU - Galvan-Ampudia, C. S. AU - Julkowska, M. M. AU - Darwish, E. AU - Gandullo, J. AU - Korver, R. A. AU - Brunoud, G. AU - Haring, M. A. AU - Munnik, T. AU - Vernoux, T. AU - Testerink, C. PY - 2013 DA - 2013// TI - Halotropism is a response of plant roots to avoid a saline environment JO - Curr Biol VL - 23 UR - https://doi.org/10.1016/j.cub.2013.08.042 DO - 10.1016/j.cub.2013.08.042 ID - Galvan-Ampudia2013 ER - TY - JOUR AU - Pierik, R. AU - Testerink, C. PY - 2014 DA - 2014// TI - The art of being flexible: how to escape from shade, salt, and drought JO - Plant Physiol VL - 166 UR - https://doi.org/10.1104/pp.114.239160 DO - 10.1104/pp.114.239160 ID - Pierik2014 ER - TY - JOUR AU - Chae, K. AU - Lord, E. M. PY - 2011 DA - 2011// TI - Pollen tube growth and guidance: roles of small, secreted proteins JO - Ann Bot VL - 108 UR - https://doi.org/10.1093/aob/mcr015 DO - 10.1093/aob/mcr015 ID - Chae2011 ER - TY - JOUR AU - Eapen, D. AU - Barroso, M. L. AU - Ponce, G. AU - Campos, M. E. AU - Cassab, G. I. PY - 2005 DA - 2005// TI - Hydrotropism: root growth responses to water JO - Trends Plant Sci VL - 10 UR - https://doi.org/10.1016/j.tplants.2004.11.004 DO - 10.1016/j.tplants.2004.11.004 ID - Eapen2005 ER - TY - JOUR AU - Soeno, K. AU - Goda, H. AU - Ishii, T. AU - Ogura, T. AU - Tachikawa, T. AU - Sasaki, E. AU - Yoshida, S. AU - Fujioka, S. AU - Asami, T. AU - Shimada, Y. PY - 2010 DA - 2010// TI - Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesis JO - Plant Cell Physiol VL - 51 UR - https://doi.org/10.1093/pcp/pcq032 DO - 10.1093/pcp/pcq032 ID - Soeno2010 ER - TY - JOUR AU - Rutherford, R. AU - Gallois, P. AU - Masson, P. H. PY - 1998 DA - 1998// TI - Mutations in Arabidopsis thaliana genes involved in the tryptophan biosynthesis pathway affect root waving on tilted agar surfaces JO - Plant J VL - 16 UR - https://doi.org/10.1046/j.1365-313x.1998.00279.x DO - 10.1046/j.1365-313x.1998.00279.x ID - Rutherford1998 ER - TY - JOUR AU - Rutherford, R. AU - Masson, P. H. PY - 1996 DA - 1996// TI - Arabidopsis thaliana sku mutant seedlings show exaggerated surface-dependent alteration in root growth vector JO - Plant Physiol VL - 111 UR - https://doi.org/10.1104/pp.111.4.987 DO - 10.1104/pp.111.4.987 ID - Rutherford1996 ER - TY - JOUR AU - Sedbrook, J. C. AU - Ehrhardt, D. W. AU - Fisher, S. E. AU - Scheible, W. R. AU - Somerville, C. R. PY - 2004 DA - 2004// TI - The Arabidopsis SKU6/SPIRAL1 gene encodes a plus end-localized microtubule-interacting protein involved in directional cell expansion JO - Plant Cell VL - 16 UR - https://doi.org/10.1105/tpc.020644 DO - 10.1105/tpc.020644 ID - Sedbrook2004 ER - TY - JOUR AU - Yuen, C. Y. AU - Pearlman, R. S. AU - Silo-Suh, L. AU - Hilson, P. AU - Carroll, K. L. AU - Masson, P. H. PY - 2003 DA - 2003// TI - WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis JO - Plant Physiol VL - 131 UR - https://doi.org/10.1104/pp.015966 DO - 10.1104/pp.015966 ID - Yuen2003 ER - TY - JOUR AU - Hobe, M. AU - Muller, R. AU - Grunewald, M. AU - Brand, U. AU - Simon, R. PY - 2003 DA - 2003// TI - Loss of CLE40, a protein functionally equivalent to the stem cell restricting signal CLV3, enhances root waving in Arabidopsis JO - Dev Genes Evol VL - 213 UR - https://doi.org/10.1007/s00427-003-0329-5 DO - 10.1007/s00427-003-0329-5 ID - Hobe2003 ER - TY - JOUR AU - Deruere, J. AU - Jackson, K. AU - Garbers, C. AU - Soll, D. AU - Delong, A. PY - 1999 DA - 1999// TI - The RCN1-encoded A subunit of protein phosphatase 2A increases phosphatase activity in vivo JO - Plant J VL - 20 UR - https://doi.org/10.1046/j.1365-313x.1999.00607.x DO - 10.1046/j.1365-313x.1999.00607.x ID - Deruere1999 ER - TY - JOUR AU - Santner, A. A. AU - Watson, J. C. PY - 2006 DA - 2006// TI - The WAG1 and WAG2 protein kinases negatively regulate root waving in Arabidopsis JO - Plant J VL - 45 UR - https://doi.org/10.1111/j.1365-313X.2005.02641.x DO - 10.1111/j.1365-313X.2005.02641.x ID - Santner2006 ER - TY - STD TI - Qi B, Zheng H. Modulation of root-skewing responses by KNAT1 in Arabidopsis thaliana. Plant J. 2013;76(3):380–92. ID - ref55 ER - TY - JOUR AU - Sedbrook, J. C. AU - Carroll, K. L. AU - Hung, K. F. AU - Masson, P. H. AU - Somerville, C. R. PY - 2002 DA - 2002// TI - The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol-anchored glycoprotein involved in directional root growth JO - Plant Cell VL - 14 UR - https://doi.org/10.1105/tpc.002360 DO - 10.1105/tpc.002360 ID - Sedbrook2002 ER - TY - STD TI - Yang X, Wang B, Farris B, Clark G, and Roux SJ. Modulation of Root Skewing in Arabidopsis by Apyrases and Extracellular ATP. Plant Cell Physiol. 2015;56:2197-206. ID - ref57 ER - TY - JOUR AU - Grabov, A. AU - Ashley, M. K. AU - Rigas, S. AU - Hatzopoulos, P. AU - Dolan, L. AU - Vicente-Agullo, F. PY - 2005 DA - 2005// TI - Morphometric analysis of root shape JO - New Phytol VL - 165 UR - https://doi.org/10.1111/j.1469-8137.2004.01258.x DO - 10.1111/j.1469-8137.2004.01258.x ID - Grabov2005 ER - TY - JOUR AU - Maris, A. AU - Suslov, D. AU - Fry, S. C. AU - Verbelen, J. P. AU - Vissenberg, K. PY - 2009 DA - 2009// TI - Enzymic characterization of two recombinant xyloglucan endotransglucosylase/hydrolase (XTH) proteins of Arabidopsis and their effect on root growth and cell wall extension JO - J Exp Bot VL - 60 UR - https://doi.org/10.1093/jxb/erp229 DO - 10.1093/jxb/erp229 ID - Maris2009 ER - TY - JOUR AU - Wu, X. AU - Shi, Y. AU - Li, J. AU - Xu, L. AU - Fang, Y. AU - Li, X. AU - Qi, Y. PY - 2013 DA - 2013// TI - A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis JO - Cell Res VL - 23 UR - https://doi.org/10.1038/cr.2013.23 DO - 10.1038/cr.2013.23 ID - Wu2013 ER - TY - JOUR AU - Carthew, R. W. AU - Sontheimer, E. J. PY - 2009 DA - 2009// TI - Origins and mechanisms of miRNAs and siRNAs JO - Cell VL - 136 UR - https://doi.org/10.1016/j.cell.2009.01.035 DO - 10.1016/j.cell.2009.01.035 ID - Carthew2009 ER - TY - JOUR AU - Ogura, Y. AU - Komatsu, A. AU - Zikihara, K. AU - Nanjo, T. AU - Tokutomi, S. AU - Wada, M. AU - Kiyosue, T. PY - 2008 DA - 2008// TI - Blue light diminishes interaction of PAS/LOV proteins, putative blue light receptors in Arabidopsis thaliana, with their interacting partners JO - J Plant Res VL - 121 UR - https://doi.org/10.1007/s10265-007-0118-8 DO - 10.1007/s10265-007-0118-8 ID - Ogura2008 ER - TY - JOUR AU - Cederholm, H. M. AU - Benfey, P. N. PY - 2015 DA - 2015// TI - Distinct sensitivities to phosphate deprivation suggest that RGF peptides play disparate roles in Arabidopsis thaliana root development JO - New Phytol VL - 207 UR - https://doi.org/10.1111/nph.13405 DO - 10.1111/nph.13405 ID - Cederholm2015 ER - TY - JOUR AU - Tanaka, Y. AU - Sano, T. AU - Tamaoki, M. AU - Nakajima, N. AU - Kondo, N. AU - Hasezawa, S. PY - 2005 DA - 2005// TI - Ethylene inhibits abscisic acid-induced stomatal closure in Arabidopsis JO - Plant Physiol VL - 138 UR - https://doi.org/10.1104/pp.105.063503 DO - 10.1104/pp.105.063503 ID - Tanaka2005 ER - TY - JOUR AU - Benjamins, R. AU - Ampudia, C. S. AU - Hooykaas, P. J. AU - Offringa, R. PY - 2003 DA - 2003// TI - PINOID-mediated signaling involves calcium-binding proteins JO - Plant Physiol VL - 132 UR - https://doi.org/10.1104/pp.103.019943 DO - 10.1104/pp.103.019943 ID - Benjamins2003 ER - TY - JOUR AU - Ivanova, A. AU - Law, S. R. AU - Narsai, R. AU - Duncan, O. AU - Lee, J. H. AU - Zhang, B. AU - Aken, O. AU - Radomiljac, J. D. AU - Merwe, M. AU - Yi, K. PY - 2014 DA - 2014// TI - A functional antagonistic relationship between auxin and mitochondrial retrograde signaling regulates alternative Oxidase1a expression in Arabidopsis JO - Plant Physiol VL - 165 UR - https://doi.org/10.1104/pp.114.237495 DO - 10.1104/pp.114.237495 ID - Ivanova2014 ER - TY - JOUR AU - Lamesch, P. AU - Berardini, T. Z. AU - Li, D. AU - Swarbreck, D. AU - Wilks, C. AU - Sasidharan, R. AU - Muller, R. AU - Dreher, K. AU - Alexander, D. L. AU - Garcia-Hernandez, M. PY - 2012 DA - 2012// TI - The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1090 DO - 10.1093/nar/gkr1090 ID - Lamesch2012 ER - TY - JOUR AU - Hooper, C. M. AU - Tanz, S. K. AU - Castleden, I. R. AU - Vacher, M. A. AU - Small, I. D. AU - Millar, A. H. PY - 2014 DA - 2014// TI - SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu550 DO - 10.1093/bioinformatics/btu550 ID - Hooper2014 ER - TY - JOUR AU - Winter, D. AU - Vinegar, B. AU - Nahal, H. AU - Ammar, R. AU - Wilson, G. V. AU - Provart, N. J. PY - 2007 DA - 2007// TI - An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets JO - PLoS One VL - 2 UR - https://doi.org/10.1371/journal.pone.0000718 DO - 10.1371/journal.pone.0000718 ID - Winter2007 ER - TY - JOUR AU - Bargmann, B. O. AU - Vanneste, S. AU - Krouk, G. AU - Nawy, T. AU - Efroni, I. AU - Shani, E. AU - Choe, G. AU - Friml, J. AU - Bergmann, D. C. AU - Estelle, M. PY - 2013 DA - 2013// TI - A map of cell type-specific auxin responses JO - Mol Syst Biol VL - 9 UR - https://doi.org/10.1038/msb.2013.40 DO - 10.1038/msb.2013.40 ID - Bargmann2013 ER - TY - JOUR AU - Brady, S. M. AU - Orlando, D. A. AU - Lee, J. Y. AU - Wang, J. Y. AU - Koch, J. AU - Dinneny, J. R. AU - Mace, D. AU - Ohler, U. AU - Benfey, P. N. PY - 2007 DA - 2007// TI - A high-resolution root spatiotemporal map reveals dominant expression patterns JO - Science VL - 318 UR - https://doi.org/10.1126/science.1146265 DO - 10.1126/science.1146265 ID - Brady2007 ER - TY - JOUR AU - Lisko, K. A. AU - Torres, R. AU - Harris, R. S. AU - Belisle, M. AU - Vaughan, M. M. AU - Jullian, B. AU - Chevone, B. I. AU - Mendes, P. AU - Nessler, C. L. AU - Lorence, A. PY - 2013 DA - 2013// TI - Elevating vitamin C content via overexpression of myo-inositol oxygenase and l-gulono-1,4-lactone oxidase in Arabidopsis leads to enhanced biomass and tolerance to abiotic stresses JO - In Vitro Cell Dev Biol Plant VL - 49 UR - https://doi.org/10.1007/s11627-013-9568-y DO - 10.1007/s11627-013-9568-y ID - Lisko2013 ER - TY - JOUR AU - Alford, S. R. AU - Rangarajan, P. AU - Williams, P. AU - Gillaspy, G. E. PY - 2012 DA - 2012// TI - myo-inositol oxygenase is required for responses to Low energy conditions in Arabidopsis thaliana JO - Front Plant Sci VL - 3 UR - https://doi.org/10.3389/fpls.2012.00069 DO - 10.3389/fpls.2012.00069 ID - Alford2012 ER - TY - JOUR AU - Endres, S. AU - Tenhaken, R. PY - 2011 DA - 2011// TI - Down-regulation of the myo-inositol oxygenase gene family has no effect on cell wall composition in Arabidopsis JO - Planta VL - 234 UR - https://doi.org/10.1007/s00425-011-1394-z DO - 10.1007/s00425-011-1394-z ID - Endres2011 ER - TY - JOUR AU - Lin, W. D. AU - Liao, Y. Y. AU - Yang, T. J. AU - Pan, C. Y. AU - Buckhout, T. J. AU - Schmidt, W. PY - 2011 DA - 2011// TI - Coexpression-based clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling JO - Plant Physiol VL - 155 UR - https://doi.org/10.1104/pp.110.166520 DO - 10.1104/pp.110.166520 ID - Lin2011 ER - TY - JOUR AU - Fernandez-Calvino, L. AU - Guzman-Benito, I. AU - Toro, F. J. AU - Donaire, L. AU - Castro-Sanz, A. B. AU - Ruiz-Ferrer, V. AU - Llave, C. PY - 2016 DA - 2016// TI - Activation of senescence-associated dark-inducible (DIN) genes during infection contributes to enhanced susceptibility to plant viruses JO - Mol Plant Pathol VL - 17 UR - https://doi.org/10.1111/mpp.12257 DO - 10.1111/mpp.12257 ID - Fernandez-Calvino2016 ER - TY - JOUR AU - Luo, J. AU - Fuell, C. AU - Parr, A. AU - Hill, L. AU - Bailey, P. AU - Elliott, K. AU - Fairhurst, S. A. AU - Martin, C. AU - Michael, A. J. PY - 2009 DA - 2009// TI - A novel polyamine acyltransferase responsible for the accumulation of spermidine conjugates in Arabidopsis seed JO - Plant Cell VL - 21 UR - https://doi.org/10.1105/tpc.108.063511 DO - 10.1105/tpc.108.063511 ID - Luo2009 ER - TY - JOUR AU - Zimmermann, P. AU - Hirsch-Hoffmann, M. AU - Hennig, L. AU - Gruissem, W. PY - 2004 DA - 2004// TI - GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox JO - Plant Physiol VL - 136 UR - https://doi.org/10.1104/pp.104.046367 DO - 10.1104/pp.104.046367 ID - Zimmermann2004 ER - TY - JOUR AU - Dinneny, J. R. AU - Long, T. A. AU - Wang, J. Y. AU - Jung, J. W. AU - Mace, D. AU - Pointer, S. AU - Barron, C. AU - Brady, S. M. AU - Schiefelbein, J. AU - Benfey, P. N. PY - 2008 DA - 2008// TI - Cell identity mediates the response of Arabidopsis roots to abiotic stress JO - Science VL - 320 UR - https://doi.org/10.1126/science.1153795 DO - 10.1126/science.1153795 ID - Dinneny2008 ER - TY - JOUR AU - Iyer-Pascuzzi, A. S. AU - Jackson, T. AU - Cui, H. AU - Petricka, J. J. AU - Busch, W. AU - Tsukagoshi, H. AU - Benfey, P. N. PY - 2011 DA - 2011// TI - Cell identity regulators link development and stress responses in the Arabidopsis root JO - Dev Cell VL - 21 UR - https://doi.org/10.1016/j.devcel.2011.09.009 DO - 10.1016/j.devcel.2011.09.009 ID - Iyer-Pascuzzi2011 ER - TY - JOUR AU - Thieme, C. J. AU - Rojas-Triana, M. AU - Stecyk, E. AU - Schudoma, C. AU - Zhang, W. AU - Yang, L. AU - Minambres, M. AU - Walther, D. AU - Schulze, W. X. AU - Paz-Ares, J. PY - 2015 DA - 2015// TI - Endogenous Arabidopsis messenger RNAs transported to distant tissues JO - Nat Plants VL - 1 UR - https://doi.org/10.1038/nplants.2015.25 DO - 10.1038/nplants.2015.25 ID - Thieme2015 ER - TY - JOUR AU - Renault, H. AU - Amrani, A. AU - Berger, A. AU - Mouille, G. AU - Soubigou-Taconnat, L. AU - Bouchereau, A. AU - Deleu, C. PY - 2013 DA - 2013// TI - gamma-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots JO - Plant Cell Environ VL - 36 UR - https://doi.org/10.1111/pce.12033 DO - 10.1111/pce.12033 ID - Renault2013 ER - TY - JOUR AU - Schenk, P. M. AU - Kazan, K. AU - Rusu, A. G. AU - Manners, J. M. AU - Maclean, D. J. PY - 2005 DA - 2005// TI - The SEN1 gene of Arabidopsis is regulated by signals that link plant defence responses and senescence JO - Plant Physiol Biochem VL - 43 UR - https://doi.org/10.1016/j.plaphy.2005.09.002 DO - 10.1016/j.plaphy.2005.09.002 ID - Schenk2005 ER - TY - STD TI - Wu P, Ma L, Hou X, Wang M, Wu Y, Liu F, Deng XW. Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol. 2003;132(3):1260–71. ID - ref84 ER - TY - JOUR AU - Durand, M. AU - Porcheron, B. AU - Hennion, N. AU - Maurousset, L. AU - Lemoine, R. AU - Pourtau, N. PY - 2016 DA - 2016// TI - Water deficit enhances C export to the roots in Arabidopsis thaliana plants with contribution of sucrose transporters in both shoot and roots JO - Plant Physiol VL - 170 ID - Durand2016 ER - TY - JOUR AU - Hill, C. B. AU - Jha, D. AU - Bacic, A. AU - Tester, M. AU - Roessner, U. PY - 2013 DA - 2013// TI - Characterization of ion contents and metabolic responses to salt stress of different Arabidopsis AtHKT1;1 genotypes and their parental strains JO - Mol Plant VL - 6 UR - https://doi.org/10.1093/mp/sss125 DO - 10.1093/mp/sss125 ID - Hill2013 ER - TY - JOUR AU - Brenner, W. G. AU - Schmulling, T. PY - 2012 DA - 2012// TI - Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses JO - BMC Plant Biol VL - 12 UR - https://doi.org/10.1186/1471-2229-12-112 DO - 10.1186/1471-2229-12-112 ID - Brenner2012 ER - TY - JOUR AU - Shkolnik-Inbar, D. AU - Adler, G. AU - Bar-Zvi, D. PY - 2013 DA - 2013// TI - ABI4 downregulates expression of the sodium transporter HKT1;1 in Arabidopsis roots and affects salt tolerance JO - Plant J VL - 73 UR - https://doi.org/10.1111/tpj.12091 DO - 10.1111/tpj.12091 ID - Shkolnik-Inbar2013 ER - TY - JOUR AU - Reimand, J. AU - Arak, T. AU - Vilo, J. PY - 2011 DA - 2011// TI - g:Profiler--a web server for functional interpretation of gene lists (2011 update) JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr378 DO - 10.1093/nar/gkr378 ID - Reimand2011 ER - TY - JOUR AU - Reimand, J. AU - Kull, M. AU - Peterson, H. AU - Hansen, J. AU - Vilo, J. PY - 2007 DA - 2007// TI - g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm226 DO - 10.1093/nar/gkm226 ID - Reimand2007 ER - TY - JOUR AU - Chen, L. Q. AU - Qu, X. Q. AU - Hou, B. H. AU - Sosso, D. AU - Osorio, S. AU - Fernie, A. R. AU - Frommer, W. B. PY - 2012 DA - 2012// TI - Sucrose efflux mediated by SWEET proteins as a key step for phloem transport JO - Science VL - 335 UR - https://doi.org/10.1126/science.1213351 DO - 10.1126/science.1213351 ID - Chen2012 ER - TY - JOUR AU - Duan, Z. AU - Homma, A. AU - Kobayashi, M. AU - Nagata, N. AU - Kaneko, Y. AU - Fujiki, Y. AU - Nishida, I. PY - 2014 DA - 2014// TI - Photoassimilation, assimilate translocation and plasmodesmal biogenesis in the source leaves of Arabidopsis thaliana grown under an increased atmospheric CO2 concentration JO - Plant Cell Physiol VL - 55 UR - https://doi.org/10.1093/pcp/pcu004 DO - 10.1093/pcp/pcu004 ID - Duan2014 ER - TY - JOUR AU - Yuan, M. AU - Wang, S. PY - 2013 DA - 2013// TI - Rice MtN3/saliva/SWEET family genes and their homologs in cellular organisms JO - Mol Plant VL - 6 UR - https://doi.org/10.1093/mp/sst035 DO - 10.1093/mp/sst035 ID - Yuan2013 ER - TY - JOUR AU - Badri, D. V. AU - Vivanco, J. M. PY - 2009 DA - 2009// TI - Regulation and function of root exudates JO - Plant Cell Environ VL - 32 UR - https://doi.org/10.1111/j.1365-3040.2009.01926.x DO - 10.1111/j.1365-3040.2009.01926.x ID - Badri2009 ER - TY - JOUR AU - Fujiki, Y. AU - Yoshikawa, Y. AU - Sato, T. AU - Inada, N. AU - Ito, M. AU - Nishida, I. AU - Watanabe, A. PY - 2001 DA - 2001// TI - Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars JO - Physiol Plant VL - 111 UR - https://doi.org/10.1034/j.1399-3054.2001.1110312.x DO - 10.1034/j.1399-3054.2001.1110312.x ID - Fujiki2001 ER - TY - JOUR AU - Fujiki, Y. AU - Ito, M. AU - Nishida, I. AU - Watanabe, A. PY - 2000 DA - 2000// TI - Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of DIN gene expression in suspension-cultured cells of Arabidopsis JO - Plant Physiol VL - 124 UR - https://doi.org/10.1104/pp.124.3.1139 DO - 10.1104/pp.124.3.1139 ID - Fujiki2000 ER - TY - STD TI - Gomez-Sagasti MT, Barrutia O, Ribas G, Garbisu C, Becerril JM. Early transcriptomic response of Arabidopsis thaliana to polymetallic contamination: implications for the identification of potential biomarkers of metal exposure. Metallomics. 2016;8(5):518–31. ID - ref97 ER - TY - JOUR AU - Fujiki, Y. AU - Nakagawa, Y. AU - Furumoto, T. AU - Yoshida, S. AU - Biswal, B. AU - Ito, M. AU - Watanabe, A. AU - Nishida, I. PY - 2005 DA - 2005// TI - Response to darkness of late-responsive dark-inducible genes is positively regulated by leaf age and negatively regulated by calmodulin-antagonist-sensitive signalling in Arabidopsis thaliana JO - Plant Cell Physiol VL - 46 UR - https://doi.org/10.1093/pcp/pci174 DO - 10.1093/pcp/pci174 ID - Fujiki2005 ER - TY - JOUR AU - Zhu, H. AU - Qian, W. AU - Lu, X. AU - Li, D. AU - Liu, X. AU - Liu, K. AU - Wang, D. PY - 2005 DA - 2005// TI - Expression patterns of purple acid phosphatase genes in Arabidopsis organs and functional analysis of AtPAP23 predominantly transcribed in flower JO - Plant Mol Biol VL - 59 UR - https://doi.org/10.1007/s11103-005-0183-0 DO - 10.1007/s11103-005-0183-0 ID - Zhu2005 ER - TY - JOUR AU - Salinas-Mondragon, R. E. AU - Kajla, J. D. AU - Perera, I. Y. AU - Brown, C. S. AU - Sederoff, H. W. PY - 2010 DA - 2010// TI - Role of inositol 1,4,5-triphosphate signalling in gravitropic and phototropic gene expression JO - Plant Cell Environ VL - 33 UR - https://doi.org/10.1111/j.1365-3040.2010.02204.x DO - 10.1111/j.1365-3040.2010.02204.x ID - Salinas-Mondragon2010 ER - TY - JOUR AU - Yu, C. AU - Hou, X. L. AU - Wu, P. PY - 2005 DA - 2005// TI - [The effects of phosphorus, glucose and cytokinin on SEN1 gene expression in Arabidopsis] JO - Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao VL - 31 ID - Yu2005 ER - TY - JOUR AU - Xue, S. AU - Yao, X. AU - Luo, W. AU - Jha, D. AU - Tester, M. AU - Horie, T. AU - Schroeder, J. I. PY - 2011 DA - 2011// TI - AtHKT1;1 mediates nernstian sodium channel transport properties in Arabidopsis root stelar cells JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0024725 DO - 10.1371/journal.pone.0024725 ID - Xue2011 ER - TY - JOUR AU - Rus, A. AU - Lee, B. H. AU - Munoz-Mayor, A. AU - Sharkhuu, A. AU - Miura, K. AU - Zhu, J. K. AU - Bressan, R. A. AU - Hasegawa, P. M. PY - 2004 DA - 2004// TI - AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta JO - Plant Physiol VL - 136 UR - https://doi.org/10.1104/pp.104.042234 DO - 10.1104/pp.104.042234 ID - Rus2004 ER - TY - JOUR AU - Rus, A. AU - Yokoi, S. AU - Sharkhuu, A. AU - Reddy, M. AU - Lee, B. H. AU - Matsumoto, T. K. AU - Koiwa, H. AU - Zhu, J. K. AU - Bressan, R. A. AU - Hasegawa, P. M. PY - 2001 DA - 2001// TI - AtHKT1 is a salt tolerance determinant that controls Na+ entry into plant roots JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.241501798 DO - 10.1073/pnas.241501798 ID - Rus2001 ER - TY - JOUR AU - Brinker, M. AU - Brosche, M. AU - Vinocur, B. AU - Abo-Ogiala, A. AU - Fayyaz, P. AU - Janz, D. AU - Ottow, E. A. AU - Cullmann, A. D. AU - Saborowski, J. AU - Kangasjarvi, J. PY - 2010 DA - 2010// TI - Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation JO - Plant Physiol VL - 154 UR - https://doi.org/10.1104/pp.110.164152 DO - 10.1104/pp.110.164152 ID - Brinker2010 ER - TY - JOUR AU - Schneider, C. A. AU - Rasband, W. S. AU - Eliceiri, K. W. PY - 2012 DA - 2012// TI - NIH Image to ImageJ: 25 years of image analysis JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2089 DO - 10.1038/nmeth.2089 ID - Schneider2012 ER - TY - JOUR AU - Li, H. AU - Shen, T. AU - Smith, M. B. AU - Fujiwara, I. AU - Vavylonis, D. AU - Huang, X. PY - 2009 DA - 2009// TI - Automated actin filament segmentation, tracking and tip elongation measurements based on open active contour models JO - Proc IEEE Int Symp Biomed Imaging VL - 2009 ID - Li2009 ER - TY - JOUR AU - Smith, M. B. AU - Li, H. AU - Shen, T. AU - Huang, X. AU - Yusuf, E. AU - Vavylonis, D. PY - 2010 DA - 2010// TI - Segmentation and tracking of cytoskeletal filaments using open active contours JO - Cytoskeleton (Hoboken) VL - 67 UR - https://doi.org/10.1002/cm.20481 DO - 10.1002/cm.20481 ID - Smith2010 ER - TY - STD TI - RootMeasurement [https://github.com/eschultzphd/RootMeasurement]. Accessed 20 Apr 2016. UR - https://github.com/eschultzphd/RootMeasurement ID - ref109 ER - TY - JOUR AU - Langsrud, O. PY - 2003 DA - 2003// TI - ANOVA for unbalanced data: use type II instead of type III sums of squares JO - Stat Comput VL - 13 UR - https://doi.org/10.1023/A:1023260610025 DO - 10.1023/A:1023260610025 ID - Langsrud2003 ER - TY - JOUR AU - Du, Z. AU - Zhou, X. AU - Ling, Y. AU - Zhang, Z. AU - Su, Z. PY - 2010 DA - 2010// TI - agriGO: a GO analysis toolkit for the agricultural community JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq310 DO - 10.1093/nar/gkq310 ID - Du2010 ER - TY - JOUR AU - Obayashi, T. AU - Okamura, Y. AU - Ito, S. AU - Tadaka, S. AU - Aoki, Y. AU - Shirota, M. AU - Kinoshita, K. PY - 2014 DA - 2014// TI - ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants JO - Plant Cell Physiol VL - 55 UR - https://doi.org/10.1093/pcp/pct178 DO - 10.1093/pcp/pct178 ID - Obayashi2014 ER - TY - JOUR AU - Chatr-Aryamontri, A. AU - Breitkreutz, B. J. AU - Oughtred, R. AU - Boucher, L. AU - Heinicke, S. AU - Chen, D. AU - Stark, C. AU - Breitkreutz, A. AU - Kolas, N. AU - O’Donnell, L. PY - 2015 DA - 2015// TI - The BioGRID interaction database: 2015 update JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1204 DO - 10.1093/nar/gku1204 ID - Chatr-Aryamontri2015 ER - TY - JOUR AU - Stark, C. AU - Breitkreutz, B. J. AU - Reguly, T. AU - Boucher, L. AU - Breitkreutz, A. AU - Tyers, M. PY - 2006 DA - 2006// TI - BioGRID: A general repository for interaction datasets JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj109 DO - 10.1093/nar/gkj109 ID - Stark2006 ER - TY - JOUR AU - Consortium, T. U. PY - 2015 DA - 2015// TI - UniProt: a hub for protein information JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku989 DO - 10.1093/nar/gku989 ID - Consortium2015 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. PY - 2000 DA - 2000// TI - KEGG: kyoto encyclopedia of genes and genomes JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.27 DO - 10.1093/nar/28.1.27 ID - Kanehisa2000 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Sato, Y. AU - Kawashima, M. AU - Furumichi, M. AU - Tanabe, M. PY - 2014 DA - 2014// TI - Data, information, knowledge and principle: back to metabolism in KEGG JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1076 DO - 10.1093/nar/gkt1076 ID - Kanehisa2014 ER - TY - JOUR AU - Jensen, L. J. AU - Kuhn, M. AU - Stark, M. AU - Chaffron, S. AU - Creevey, C. AU - Muller, J. AU - Doerks, T. AU - Julien, P. AU - Roth, A. AU - Simonovic, M. PY - 2009 DA - 2009// TI - STRING 8--a global view on proteins and their functional interactions in 630 organisms JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn760 DO - 10.1093/nar/gkn760 ID - Jensen2009 ER - TY - JOUR AU - Warde-Farley, D. AU - Donaldson, S. L. AU - Comes, O. AU - Zuberi, K. AU - Badrawi, R. AU - Chao, P. AU - Franz, M. AU - Grouios, C. AU - Kazi, F. AU - Lopes, C. T. PY - 2010 DA - 2010// TI - The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq537 DO - 10.1093/nar/gkq537 ID - Warde-Farley2010 ER -